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. 2002 Oct 2;99(21):13549–13553. doi: 10.1073/pnas.222243999

Table 1.

Sequence data of functional variants obtained by additional mutagenesis experiments

Wild-type residue Candidate amino acids in additional mutagenesis Amino acids observed in functional variants* Simp-2
M197 A, D, L, M, R, T, V, Y M(9), Y(3) Y
N41 D, N, R, T, Y N(9), R(2), T(1) R
Q117 D, Q, R, T, Y§ D(2), Q(4), R(2), T(4) T
Q168 D, Q, R, T, Y§ D(2), Q(6), R(2), T(3) T
Q141 D, Q, R, T, Y§ D(1), R(5), Q(3), T(2), Y(1) R
Q5 D, Q, R, T, Y§ Q(8), T(4) T
*

An average of 12 functional variants were analyzed. These variants were obtained by in vivo complementation of the pyrE-defective E. coli following the site-directed random mutagenesis at the indicated positions. The frequency of an amino acid is given in parentheses next to the amino acid. 

The codon was randomized by using four mutagenic primers that contained RCG, CKG, KAC, and RTG, respectively (R = A + G; K = G + T). 

The codon was randomized by using two mutagenic primers that contained DAT and ASA, respectively (D = A + G + T; S = C + G). 

§

Each of these codons was randomized by using three mutagenic primers that contained KAT, CRA, and ACT, respectively (K = G + T; R = A + G).