ANCOM-BC2	Analysis of Composition of Microbiomes with Bias Correction 2
BMI	Body mass index
CCU	Cervical cancer (invasive carcinoma)
CI	Confidence interval
CIN	Cervical intraepithelial neoplasia
CLR	Centered log-ratio
CST	Community state type
DNA	Deoxyribonucleic acid
FDR	False discovery rate
HPV	Human papillomavirus
HR-HPV	High-risk human papillomavirus
HSIL	High-grade squamous intraepithelial lesion
logFC	Log fold change
LSIL	Low-grade squamous intraepithelial lesion
NILM	Negative for intraepithelial neoplasia
ONT	Oxford Nanopore Technologies
OR	Odds ratio
PCoA	Principal Coordinates Analysis
PERMANOVA	Permutational multivariate analysis of variance
PERMDISP	Permutational analysis of multivariate dispersions
Q1–Q3	First to third quartile (interquartile range)
q	FDR-adjusted p value
R2	Coefficient of determination
ROC	Receiver operating characteristic
SD	Standard deviation
STIs	Sexually transmitted infections
ρ (rho)	Spearman’s rank correlation coefficient