LRS	long-read sequencing
SRS	short-read sequencing
TGS	third-generation sequencing
SGS	second-generation sequencing
NGS	next-generation sequencing
WGS	whole-genome sequencing
ONT	Oxford Nanopore Technology
PacBio	Pacific Biosciences
HGT	horizontal gene transfer
SNV	single-nucleotide variation
HAB	harmful algal bloom
BUSCO	Benchmarking Universal Single-Copy Orthologs
T2T	telomere-to-telomere
MAG	metagenome-assembled genome
AI	artificial intelligence
ML	machine learning
ITS	internal transcribed spacer
coi	cytochrome c oxidase subunit 1
CTAB	cetyltrimethylammonium bromide
PE	paired-end
SE	single-end
mtDNA	mitochondrial DNA
eDNA	environmental DNA
N/A	not available for this study