TABLE 3.
Sequence similarities of tRNAs found in 16S-23S ISRs of Carnobacterium species
| ISR | tRNA | Organism(s) | Matching organisms | % Similaritya |
|---|---|---|---|---|
| M-ISR | tRNAAla (UGC) | C. mobile, C. gallinarum, C. piscicola, C. divergens | Bacillus megaterium | 100 (0/73) |
| Bacillus pseudomycoides | 100 (0/73) | |||
| Bacillus mycoides | 100 (0/73) | |||
| Bacillus thuringiensis | 100 (0/73) | |||
| Streptococcus difficile | 98 (1/73) | |||
| Lactococcus lactis subsp. lactis | 98 (1/73) | |||
| L-ISR | tRNAIi (GAu) | C. mobile, C. gallinarum, C. piscicola | Lactobacillus sakei | 100 (0/74) |
| Bacillus sporothermodurans | 100 (0/74) | |||
| Bacillus pseudomycoides | 100 (0/74) | |||
| Listeria innocua | 100 (0/74) | |||
| Listeria monocytogenes | 100 (0/74) | |||
| Lactobacillus graminis | 100 (0/74) | |||
| Lactobacillus curvatus | 100 (0/74) | |||
| Bacillus subtilis | 97 (2/74) | |||
| C. divergens | Lactobacillus sakei | 98 (1/74) | ||
| Bacillus sporothermodurans | 98 (1/74) | |||
| Bacillus megaterium | 95 (3/74) | |||
| tRNAAla (UGC) | C. mobile | Bacillus megaterium | 98 (1/73) | |
| Alcanivorax borkumensis | 98 (1/73) | |||
| C. divergens, C. gallinarum, C. piscicola | Bacillus megaterium | 100 (0/73) | ||
| Bacillus cereus | 100 (0/73) | |||
| Alcanivorax borkumensis | 100 (0/73) | |||
| Lactococcus lactis subsp. lactis | 98 (1/73) |
a
The numbers in parentheses are the number of different nucleotides/total number of nucleotides. The Genbank accession numbers for the tRNAAla and tRNAIle genes are as follows: Alcanivorax borkumensis, AF197901; Bacillus cereus, AF416570; Bacillus megaterium, AF142677; Bacillus mycoides, AJ420067; Bacillus pseudomycoides, AJ420068; Bacillus sporothermodurans, AF071855; Bacillus subtilis, Z99119; Bacillus thuringiensis, AJ420060; Lactobacillus curvatus, U97135; Lactobacillus graminis, U97136; Lactobacillus sakei, U97137; Lactococcus lactis, U32972; Listeria innocua, AL596170; Listeria monocytogenes, AL591983; and Streptococcus difficile, AF064741.