TABLE 5.
16S rDNA phylogenetic analysis of 79 isolates that were not identified with the newly developed group-specific primers
| Isolate(s) | Microorganism with most similar sequence in database (accession no.) | % Simi- larity |
|---|---|---|
| Collinsella | ||
| A15, A46, A46, B02, B03, B08, B28, B49, C08, C25, C28, C35, D05, D06, D09, D10, D14, D15, D17, D18, D19, D21, D22, D26, D30, D33, D34, D41, D44, D49, E13, E19, E23 | Collinsella aerofaciens (AB011816) | 100 |
| C11, C15, C18, C41 | Collinsella aerofaciens (AB011816) | 99 |
| B17, D04, D23 | Collinsella aerofaciens (AB011816) | 98 |
| Clostridium leptum subgroup | ||
| A05, E10, E33 | Fusobacterium prausnitzii (X85022) | 99 |
| B26 | Fusobacterium prausnitzii (X85022) | 98 |
| A42, D50, E32, E34 | Fusobacterium prausnitzii (X85022) | 97 |
| C29, C44, D45 | Fusobacterium prausnitzii (X85022) | 96 |
| E47 | Fusobacterium prausnitzii (X85022) | 95 |
| C45 | Fusobacterium prausnitzii (X85022) | 94 |
| B20, B50, E07, E49 | Ruminococcus albus (L76598) | 95 |
| B01, B29 | Ruminococcus albus (L76598) | 94 |
| A02, F30 | Eubacterium desmolans (L34618) | 98 |
| E25 | Ruminococcus bromii (L76600) | 100 |
| B34 | Ruminococcus bromii (L76600) | 94 |
| A50 | Clostridium orbiscindens (Y18187) | 98 |
| Disparate cluster | ||
| B44, E09 | Bacteroides distasonis (M86695) | 100 |
| A45 | Bacteroides distasonis (M86695) | 97 |
| A14 | Bacteroides distasonis (M86695) | 94 |
| B18, B39 | Bacteroides distasonis (M86695) | 93 |
| C24 | Bacteroides putredenis (L16497) | 97 |
| E44 | Bacteroides putredenis (L16497) | 96 |
| A26 | Clostridium propionicum (X77841) | 96 |
| A38 | Clostridium aldrichii (X71846) | 92 |
| C13, D47 | Clostridium ramosum (M23731) | 93 |
| C46 | Megasphaera elsdenii (U95029) | 100 |
| F11 | Clostridium hiranonis (AB023971) | 100 |
| F22 | Anaerovibria glycerini (AJ010960) | 91 |