TABLE 2.
Homology of the Comamonas sp. strain NCIMB 9872 gene products or ORFs
| Gene designation | Function of gene product | Position in sequencea | aa | Most similar gene products [species] (accession no.) [% amino acid identity (identical aa/overlapped aa)]b |
|---|---|---|---|---|
| orf11 | Possible reductase | 213-1,331 | 372 | N-Ethylmaleimide reductase [Vibrio cholerae N16961] (AE004426) [40.2 (146/363)], Morphinone reductase MorB [Pseudomonas putida M10] (U37350) [43.0 (156/362)] |
| orf10 | Unknown | 1,345-2,280 | 311 | Hypothetical protein [Arabidopsis thaliana] (AC011665) [36.7 (18/49)], Polyprotein [Maize dwarf mosaic virus] (AJ001691) [26.3 (25/95)] |
| orf9 | Possible monooxygenase | 2,320-3,309 | 329 | Hypothetical protein [Pseudomonas aeruginosa PAO1] (AE004549) [45.2 (149/330)], Hypothetical protein AGR_L_1143p[Agrobacterium tumefaciens C58] (AE008255) [41.6 (131/315)] |
| cpnE | 5-Oxovalerate dehydrogenase | 3,435-4,883 | 482 | Putative aldehyde dehydrogenase [Mesorhizobium loti MAFF303099] (AP003006) [61.5 (292/475)], Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021] (AL603646) [60.3 (288/478)] |
| cpnD | 5-Hydroxyvalerate dehydrogenase | 4,912-6,066 | 384 | Alcohol dehydrogenase homolog [Agrobacterium tumefaciens C58] (U59485) [47.8 (184/385)], Probable iron-containing alcohol dehydrogenase [Pseudomonas aeruginosa PAO1] (AE004931) [48.8 (191/391)] |
| orf6 | Unknown | 6,158-7,030 | 290 | Unknown Orf1 [Pseudomonas sp. strain TW3] (AF043544) [41.5 (117/282)], Unknown Orf3 [Pseudomonas sp. strain YH102] (AF187880) [32.4 (89/275)] |
| cpnC | 5-Valerolactone hydrolase | 7,376-8,276 | 299 | Unknown [Mesorhizobium loti MAFF303099] (AP003012) [41.2 (121/294)], AGR_pAT_685p [Agrobacterium tumefaciens C58] (AE007915) [28.7 (74/258)] |
| cpnR | NtrC-type regulator | 8,617-10,590 | 657 | Transcription activator of acetoin dehydrogenase operon AcoR [Bacillus subtilis AC327] (D78509) [31.0 (195/629)], Acetoin catabolism regulatory protein AcoR [Ralstonia eutropha H16] (M90471) [33.2 (213/642)] |
| cpnB | CPMO | 11,235-12,887 | 550 | Cyclohexanone monooxygenase [Brevibacterium sp. strain HCU] (AF257215) [49.5 (255/515)], Baeyer-Villiger monooxygenase homologue [Rhodococcus erythropolis DCL14] (AJ303350) [39.1 (203/519)] |
| cpnA | Cyclopentanol dehydrogenase | 12,920-13,672 | 250 | Short-chain alcohol dehydrogenase family protein FabG3 [Mycobacterium tuberculosis H37Rv] (Z74025) [46.4 (115/248)], Putative oxidoreductase [Mycobacterium tuberculosis CDC1551] (AE007057) [46.4 (115/248)] |
| orf3 | Possible integrase | 13,995-15,209 | 402 | Putative integrase [Salmonella enterica serovar Typhimurium LT2] (AF001386) [27.6 (108/392)], Integrase [Shigella dysenteriae type 1; 3818T] (AF153317) [26.4 (106/402)] |
| orf4 (incomplete) | Possible cytoplasmic axial filament protein | 15,353->16,058 | 234 | Cytoplasmic axial filament protein, authentic frameshift [Neisseria meningitidis MC58] (AE002529) [62.0 (142/229)], Cytoplasmic axial filament protein homolog NMA0672 [Neisseria meningitidis Z2491] (AL162753) [62.0 (142/229)] |
a
The numbers are nucleotide positions in the sequenced segment (DDBJ/EMBL/GenBank accession no. AB073151).
b
Nonredundant protein databases in the National Center for Biotechnology Information.