Table 2.

Summary of polymorphism analysis

Parameter	Value	Comments
Number of loci screened	18
Total length of amplicons, bp.	6935	2349 coding, 4586 non-coding
Number of bases of sequence screened, bp.	213999
Number of all sequence variants (SNPs and Indels)	169	1 per 41 bp
Number of nucleotide substitutions	114
Transitions / Transversions ratio	1.53
Frequency of polymorphic sites per bp	0.0164	1 per 60.8 bp
Frequency of polymorphic sites per bp (coding)	0.0077	1 per 130.5 bp
Frequency of polymorphic sites per bp (non-coding)	0.021	1 per 47.7 bp
Number of Indels	55
Overall indel frequency	0.0079	1 per 126.1 bp
Frequency of indels per bp (coding)	0.0004	1 per 2349 bp
Frequency of indels per bp (non-coding)	0.0118	1 per 85 bp
Mean nucleotide diversity (π)	0.0063
Mean nucleotide expected heterozygosity	0.26
Mean haplotype expected heterozygosity	0.56