Table 2.
Experimental design
| Gene namea | Transcript lengthb | Primer 1 | Primer 2 |
|---|---|---|---|
| Abd-B* | 4743 | GCGAGAGAGAAAGAGCGTACGAG | TCTCGTGGTTTCCTCCTGACC |
| ac* | 961 | GGGAACGCAACCGCGTAAAGC | GGGCATTTCTCCGGATAACAGAG |
| Ada2Ac* | 2422 | GGAACTCCATGGTTTTGTATAATCC | TGGTGTGTTCATTCTGATGTGC |
| amos | 1154 | AATCGGGTACCTGAGCGGATCG | GCCAACCTCTTGAGGATCAGCAG |
| ato | 1483 | AACTGCCATTGGTCGTGCCACTC | GGTGGTGAGTTGCAGCGGTCTC |
| BBS2 | 1650 | TGGAGTTCGAGCGTATAGCCACTG | CTTCCTCGGTGGCCTCATTCC |
| B-H2 | 3089 | CCGGAAATGTCCGCAACAACG | TGGCATTGTGGTCATGTGTGG |
| bsh | 1524 | TCCCACTACAACGGAGATCAG | AGTTCCGTGTCGCGAGTGGTG |
| Bteb2 | 962 | CCGGACTTAAGTGATTGGGAGCAG | CGGACATACGGTCAGGTCATTG |
| btn | 2332 | TCACTCTTTCCACTTCACAACATGC | AAACAAAATGAGAGTGTGCAAATG |
| C15 | 1105 | CCATTGAGCGAGTCCCTGCAGTC | CGTTTCGGACTCGTCGTAGCAG |
| cato | 570 | CCGGAATGGCAATTCTTGGATG | CGATAAGAAAGCCCCCTGTCC |
| Cdk7 | 1392 | CTAAACGATGCTGCCCAATGC | GAGCCTCATAAATAGCACGAAAATG |
| CrebB-17A | 1080 | GACCGGGTGCTTGGTGTCAAC | CCCAAATGCTCACCTGCAGTC |
| debcl* | 1626 | ACTGCCCGTTGAAATTCAGAATAC | GGGGAGAGGGAATCGGCCTAC |
| dimm | 1173 | GTGCCACCAGACGAACTTCACAG | GACGGACGGGTCGAGAACTTCC |
| dmrt11E | 1134 | TCGCTGTGTTGTACCTCATGC | GCATGCAAGGGATCGGACTCG |
| dmrt93B* | 978 | CAAGAAGCTCTGCACCTACAAGAAC | TGACCCCGCAGCTCTGAAATG |
| dmrt99B | 1533 | CGCCTTGAAGGGACACAAACG | CTGACCACTCCGTGGTTCCTG |
| dys | 2707 | ACGAAGGGCGCCTCGAAGATG | CGATTTGTTTGCATCGAATCTTG |
| E(bx)* | 8834 | AAAATTTTCACGGTTGCTTAAATGG | TGCGTCTGTTTAAATGTCACTCTTC |
| E(spl) | 540 | CCGAGCTACGAGGTGATGATGG | CGACAAGTGTTTTCAGGTTGTCC |
| E(y)2 | 481 | AGATACGCGACACAAGGATGAGC | AAGTCTTGCAAATTACCAAGTTTCC |
| E5 | 1575 | GAGATCGGCTCCACTAAGGGTCAG | GTCGAGGATTCGCCCACAATC |
| Eip74EF* | 5994 | AGTTTCCGCCGCATTGTAATTG | CATTCAGCAAGTATTCTGCTTTCTC |
| eve | 1468 | ATCCTTCCTGGTTACCCGGTACTGC | ACCTCGCTCCTGCCAGTTACTTC |
| fd3F | 1083 | CGGTCACCTGTGGGCCATTTC | GCTCCTTGGGGCGCTTTAACTC |
| fd64A | 1098 | GGCCTTCTACTACCAGGGCATCG | GGTGAAAACGATCCGCACATCAG |
| fd96Ca | 1119 | CCGCTCAGCGATATCTACAAG | CAACATTTTCTCCGGCGAACTC |
| fd96Cb | 825 | TGGCCTTCGATATGTTCGAGAATG | TGGGATGAAGTGTCCAGTAGGAG |
| Fer2 | 840 | CCAGCAGCATTATATGCAACATAGC | ATGTGACGCAGGTTGTTGGAG |
| ftz | 1758 | TGTACAACATGTATCACCCCCACAG | TGTTCATGTTGTCGGCGTAGCTG |
| gcm2 | 2924 | GGGCTTTCGAATCGCGGAAAAC | TGCGAACAGGCAACACTTGAG |
| gsb | 1452 | AGCTGGAGTCCGTCCCTGTGTC | GCTGCCATCTCCACGATTTGG |
| H15 | 2555 | GACCGCAAATACGGGCGTAAAG | TCCGGTTTTTCGTGCTATTTATC |
| ham | 3327 | ACATGCAGCGAGTGGCACCAG | CCTTGGACGCACAGGACATCTG |
| hang* | 7002 | AGGAAACCCAAGAGCGAAACTCC | TTATCTTCGCCTATTTTTCCACTTC |
| hbn | 1802 | AAAAACCAACTTGTAGCAAGTGAAG | TCTTATTTTGTTAGCGATTTTCCAG |
| Her | 450 | CCCAATTGATTGCTATTGGAGTGG | CTCTGATATACTCCGGATGTAGGC |
| HGTX* | 3049 | CATATAGCCTGATCTCGTTCAAATC | GGTAACTCCGTGGCCGGAAAATATC |
| HLH3B | 1353 | CCGGGCACCTGAACGGTAATG | ATCGCGGTGACTCGTTGGTCTG |
| HLH4C | 1424 | ACCGAAATCAGTGGTGCAAATAGC | GCTGGACACTGGACTTTCTTGC |
| HLH54F | 1066 | GATGCCAGTTCTCAAAGCTCCCAAC | CTCATCGAAGTCGTCATCAAAGAAC |
| HLHm7 | 723 | CTCCGCAAGCTGAAAGAGTCTAAG | ATGCTGCACGGTGACTTCCAG |
| HLHmdelta | 1016 | ACAATGGCCGTTCAGGGTCAG | GTATAATGGGTTTTGATTTGGTGTG |
| HLHmgamma | 842 | CTGGAACTTACCGTCACCCATTTGC | GATATCGGCTTTCTCCAAACG |
| Hmx | 792 | GATGGCAACTCGAAGAGAAAGAAG | ACCATGTGGCGAGGAGCTGTC |
| lbe | 2045 | GTCAGTATCGTCAGTACCGACTTG | AAGCCTTGTACACTCAAATCTTGC |
| lbl | 1847 | CCGTAAGGATACAGCCAGGATGTGC | CTTAGCTCCAAACTCTTTTCTACGG |
| nau | 1534 | CGTACGGTCCGCAAATCGAAGTC | CGAGTGTGTGTACCGCCTTCC |
| nerfin-2 | 2088 | AGTGTCGGGCATTACCAGCAATC | CGACGAAGTGAGTGGTGTCTGG |
| Neu2 | 1149 | TCCAACACCATATGCAAGTCCTG | CAGTGGATCGTGCTTCTCAAC |
| nht | 780 | GCAAGGCAAAAGTCTCCATAAAG | TTGCATCCTGAGAGCCTGAGTC |
| OdsH | 1226 | GCCCCAAATCCGGAAATTAGTC | ATCCATGGACAAGTTGAGAACG |
| org-1 | 2100 | TGCTATGGCAACGACTACTGG | GTTGTAGTCCGTTAGGCTGGTGTC |
| Poxn | 2178 | GCCTGAGACTGAGCATCCTAATAGC | CCAAATGGCGTTGCTCGAACTG |
| Rfx | 3943 | ACCCAGAAGATGTCAACAGTCGTG | TTCGCCTGGTCAGCTCTTTAC |
| rn | 3661 | TCGTTCGTTGTAACGCCCTACC | GGGGTACGAGCGGAACTGGTG |
| ro | 1241 | CATAGCGAACACTACGATTCTATCC | GGATCTAAGCTGTCACTCCTTTTG |
| Rpb4c* | 2422 | TGAGGAGCTGCGCCAAATACTCG | TCCTCGAAGCGACCCTCTAGTGAAG |
| sc | 1422 | CGGCTCCATATAATGTAGACCAATC | GCGAGGAACCAGGCGATAGAG |
| sens | 2450 | GATTTGTGCAGTGAACAGTATTGAG | TCACTTTCTTGGCGTTGTGATCTTG |
| side* | 2820 | GATTTGGGCTGTCGGCTTCAC | GTTTTCCCATTGTCCGGGCATC |
| sisA | 768 | CCGCACTATCGACAGCATCGTC | GTGAACTGCTTCCGCGATACG |
| slou | 2778 | ACAGGCACACAACACGGCACATC | GGCAAGTCAATAGCTAAATGCTG |
| Sox100B | 1945 | CTGAAAGCCGAGCAGAAGAAGG | GGCATAGTTTGCCAAAACCAG |
| Sox14* | 3159 | CAGGACACGGAGAACAAATAAGTCC | GCCAATCTACACTAAACATCGATTC |
| Sox15 | 3654 | GCGCTATCCGCTGTTTGTATCTTG | TCTTGGGAAAATGAAAATTCACG |
| Sox21a | 1167 | TAGGCTCTGGATCGGGAAACAC | CTCCCACACTCATACCCATGC |
| Su(z)2 | 6313 | ACCTGCAAAACACGCACAACAC | GCATCTTTCTGCCTATTCTATCTGC |
| sv | 4690 | AGAGCACGATTCCCAACATCTGC | AGCTGGCCTGTACTTGTATTAAGG |
| TfIIA-S-2 | 462 | CTGGGCAGAACGCTCCAGGAC | CGTTGTGGCCCTGTAATGTTGATAG |
| TfIIEbeta | 1052 | ACCGCCGCCTAGCGATGATTC | GGAGCTGGTCTATCGGGCTTG |
| Tj | 1530 | GTGAAGCGCGAGGATCACAGTC | ATGGCCCAAAGTCGTGACCTG |
| tll | 1938 | AATTCAATTTGTGCAAGCGTTTC | TCACTTGGCACTGGTGTATCTTTG |
| tun* | 8413 | GCTGCAAATCAAATTGTCACGTTTC | AGCTGTGGTTGGGCCATCTTC |
| vnd | 3036 | TTTAAGTTGCCCTACCAGGATACC | TTCCAGACATAGTTCGATTTAGGC |
| zen | 1272 | CGATGTTAACCCCATCGGTCTG | TGATGATGACCATAGATCAAATCAC |
| zen2 | 942 | TTTCTGTCGGGATCGACTGTCGTG | CAGTTAGAAAACGCTCCTGCGTATC |
| CG10147 | 1347 | GAAGTTCCACTCCTTCCGAGCAC | TCCAGAAGCTCGTAGCACTCC |
| CG10309 | 2778 | AGGGACGCGCCAAGAATCTGAG | CGGGTGAGTAGATGTTCGTCTTG |
| CG10348 | 1593 | AAGCGGAGAAGCAGTTTCGATCAG | GCCCTTGGCATGGTGATTTAAG |
| CG10431 | 2151 | TCGGAAGATGACTCCATGAGTGG | AACCCTAATTGATGGCACAGC |
| CG10887 | 2031 | TTCACTCAACAGCAAATAGTGTTCC | AAGAATGTGAACGGCTTTGGTG |
| CG11072 | 171 | CACATCCATCAGAGCCCATAAG | CCCTCTGAACAAACTAGTGTGACG |
| CG11085 | 828 | ATAGACATTGAGGATCGATCTACGC | ATCCGAATCGTCGTTGGAGAGC |
| CG11152 | 1800 | GACTTTGGAACAATACCGCCTCCAG | ATCGTCGTTGATTGAGCTTGTGAAG |
| CG11294 | 946 | GATCTGCTCACGGAGTATATGTTTG | GCCGGGCAGCGGTGATATAAAAG |
| CG11762 | 957 | GGTGGATTTGGACGATGTTCCTG | AATCTTAGTCCGCTTATCATGTGC |
| CG11966 | 1764 | CAACTACATGCAGAGTGCCTATCAC | TTGTTGCTCTCATCCGGCAGTC |
| CG12029 | 503 | CGTTACAACCGCCGAAATAATCC | CACCGTTCGTACGCTCATCAAAC |
| CG13287 | 1386 | CACCGGGTGGAAAGACCACTC | GCGATGTGGGTGTCTCATTGTTG |
| CG13296 | 1398 | GCATGACCACTTCATCGACAGAAAC | TGGTCGGTGTGATACTGGTGCTC |
| CG1379 | 1107 | GGAAACCTGACACTGGGTGATTC | GCATCCGATTAGGTCATCAATCTC |
| CG15258 | 591 | CAAAATCGCATAACGCAGGAG | CTGGATCGACCGGATGTGTTC |
| CG15269 | 1764 | AAGGAGCGTAAATCCGCTCAGG | GCCCAGAATCTTACTGATGCTAAAG |
| CG15336 | 546 | ATCGGACGCGCATCTATTGGAATC | AGCCGCAGAACTCGCACATAAG |
| CG15398 | 885 | AGGGAGCCGAGGAAATGTCTTTGC | CACTTGCTTTGTTCGCCAGGACTTG |
| CG15455 | 921 | TCTACCGATCGCCTTCAAGGTTTTG | GTTTTGTTTGAGCGCCAGTGC |
| CG15696 | 540 | CCACCCAGCATCTTATGTCTCAAAG | GCGTACGGATGGAAAGGCAAG |
| CG15710 | 798 | CCTGTTTGCAGCCGATAAAAGAG | GCGCCACGTACACCTTGGTAAC |
| CG15782 | 455 | TGTCTATGCCCGCGAAATGCTC | TCGGGATAATGGGCTTCCTTG |
| CG1663 | 1164 | GGCGGAGGTACAGGAATCTTTC | AACTTGGATTCCTGAGCAATAGAC |
| CG16779 | 5943 | CCGGAAATGTTGGCAGATGTC | ATCCGGATACCCGATGGTCAG |
| CG16899 | 1074 | TTCTTGCGGTCGAAGGATAATGAG | TCTCTCTGCATCGGAGAACATGAG |
| CG17075 | 2907 | AAGTCCCGCAAAGGGAGTAGTGAC | TCGCTGTGCGACTCCGTCAAG |
| CG17186 | 1146 | CTCGTGCAACGTCTGCGGCTAC | AACAGTGACGATTCCACCTCAGAC |
| CG17195 | 737 | TGCATTTTGAGACGGGACCAC | GGTGTTGCACAAAACGCAGTG |
| CG17196 | 831 | TGGCCTGCTACCGTACAAGCTCAG | GCAAGTTTCCCAGGATATTGTATG |
| CG17197 | 951 | AGTACTTGGCGCGTCGAAATC | TGGTGCAGGCCCATATCAAAC |
| CG17198 | 873 | CAGTTTTTGGGATTGTTTGGACAG | TGGCATTACGTAGAAAGCTTCG |
| CG17287 | 1017 | CGGTGCATTTTCGTAGCTCCAG | AAACCATGTCCATAGAAACATGAAC |
| CG17328 | 1413 | TTTTTAAAACCGATGGCCTACCTTC | CTCTTATTTTAGCGCATTGCATC |
| CG17385 | 837 | AGACGGTGGCCAATCAGTTCAG | CGTCGAATTCTACCTCCATGC |
| CG17568 | 1509 | ATTAGCGAACTAATCGATTTTGCAG | AAGCGTATAGCACTCCGTACACAGC |
| CG17801 | 1054 | GCCGCGTCATATTTGCCCATC | TGGCGTTCATTCTGTTCTAACC |
| CG17803 | 1401 | AGACGACGGAAAAGTACAACATTC | GCCTAAGCTTTTTGTCGACCTG |
| CG18476* | 2954 | ATCAATCTGGATGCAACTGGTAGTC | TTCGGTTAGCTCGCATAAAATCTCC |
| CG2120 | 1035 | CGATCTATTGGAACTTGTGAATGG | TATTCCGAGCCCGGATTCAGC |
| CG30417 | 807 | CAACTGCTGGGCCTCCACGATTAC | CGGATCCAGTGGCTCGTAGAAAAC |
| CG30431* | 1810 | TCGTCCGTATAGATCGGGGCTTC | TTGGCATAGTTGTTTTCCTTGC |
| CG30443* | 1771 | GGAGACTACCCCGAACCTCCAC | TCGGCCTGGTTGGACGATGAC |
| CG31224* | 7059 | CAAAGCGGAAGACGAGAGGAAAG | TGCGCTCCTTCTTCCAATATACAAG |
| CG31241* | 2020 | GCGCCCAAGTACTGCTACTTCTTC | TCTCGAGGTAGAGGCTTCTGG |
| CG31612* | 3308 | ATGTTTCGGCGACGCTTATCAGTAG | GAGTGTCAGCAGAGATTCTTGTTCG |
| CG31632* | 3371 | AAAATGCAAGCCACTTCCGGTCAG | GGCCACGTCCATAACGGTTTTATC |
| CG32532* | 4422 | GCTGGAAAATTTCAATGGAGCGAAG | GGGGGCGTCCTTTCCTGATTTC |
| CG32611* | 3313 | TTGCCGAGCTGCAAACCTTAG | AACGGACGTCCTTCAATATCAC |
| CG32705* | 4705 | TGTCCGTGGGTGAACAACTGC | GTGATGATCGAAGGTCTCTATGC |
| CG32767* | 7670 | CGCAACAGATCGAATTTATACTGC | ATAGGGCGCTATCGTTAATGG |
| CG32772* | 2476 | CTCCGAAGACGTGGATCTGATATTC | TCGTCCTGCGACTGTAGGTTCTC |
| CG3485 | 993 | GATCTCTGAATGCACGGACTGTGAC | ACTTGTGCTATTGAAACCAGCAG |
| CG40351* | 5846 | AGACCCGTCCTATCCAACAATAAC | CCTGGCATTAAACCATCGTAAC |
| CG4318 | 699 | ATCCTTTTCCCAAGACCATTTGC | CCTTCGGTAGAACCGGGAAGC |
| CG4328 | 1593 | GCCGGAGTAGCCCACAATGAC | TTTGGTACTCGCACTCCTTCC |
| CG4374 | 2577 | CGAGTTTTGGCACCAGGACAAG | TAGCCCTGTAACGTGGGATCG |
| CG4565 | 672 | AATTCTGTTCTTTTGAACCCCTGTC | GTACTCGTCCGCCAAGAATTTG |
| CG4575 | 285 | GAAGAATATGGAGGCCTTTCAAAC | CGTATCGCGCCCACTTTGACG |
| CG4676 | 1008 | CTTTGCAGCACTGTCTCAGTTGG | CGATTTTTGGCTCTGCTGCTAAC |
| CG4956 | 858 | AGTTGCATTGGCCATAAAAATCAG | GGCAAAGAAGGTGCAGTGGTG |
| CG5245 | 1506 | AGTTAAAGGCGTCCCGTCGAAGC | GGCTCCAAATCTTTGCCATAACTAC |
| CG5369 | 846 | TATCCGAGAGCAATACGATCCTC | CGGATAGGTCGGTAATGTCTATGTC |
| CG6118 | 2832 | TCGAAGATCATCAAGAAGTGGAAC | CAGTGGAAGCGGCACATTGAG |
| CG7056 | 819 | CGCTGCGCTTCAATCCCATCTAC | AAGTGGGAGCCAGGACAGCAC |
| CG7368 | 1593 | TCCGCTGGTTTCCACCGTGAC | GCTGTGCTCGTCGTGAATTGC |
| CG7691 | 852 | ATTGGCGACAGGGCGACGATATAC | CGCCGCTCGGTTCACTTTGAC |
| CG7786 | 579 | CCATTCCCCAGAATCTTCGGCTAAC | AAATGGAGTAGGACGGATTGTTC |
| CG7963 | 966 | CCTTGCAGCCAATGTATTTATGC | TACACAGGTCCACTTGCATCTCC |
| CG8089 | 1875 | GTGCTGTCGAGGATTCAGGGAGAAG | TTGCACTTGCAGTGGCAGGAAG |
| CG8117 | 489 | GCGACTTGAACGGCTGCAAGG | CGTAAATTGCGTCCTCCAGTTTAG |
| CG9571 | 783 | TCCATCCGATCGCTGCTCTCC | GAAGCTGGACTGGAAGATTGGTG |
| CG9793 | 1041 | TTGGAAGTCCAAAGGGAGTTGCTC | ACAGCGTTCCCTAAAGGATATGG |
| CG9895 | 1233 | TACAGGTTAAATGGATCACGACTGC | CTCTGCGCTCCAGACGACGAC |
aGenes represented in our EST collection are indicated by asterisks.
bRelease 4.1 annotated transcript lengths in nucleotides are reported. For genes with multiple annotated transcripts, the length of the longest is reported.
cRpb4 and Ada2A were separate gene annotations in Release 3.1 but are merged into one in Release 4.1.