. 2005 Dec 2;33(21):e185. doi: 10.1093/nar/gni184

Table 4.

Summary of selected cDNA clones

Gene name^a	Clone ID^b	GenBank accession nos^c	Classification^d	Annotated transcript length^e	cDNA insert length^f	Annotated CDS length^e	cDNA ORF length^f
ac*	IP01413	BT022154	match	961	962	603	603
Ada2A^g*	IP01330	BT022166	n.d., S268P	2317	2147	1581	1581
B-H2	IP01479	BT022144	match	3089	3034	1935	1935
bsh	IP01040	BT022203	5′ extension	1524	2034	1281	1287
btn	NC	N/A	co-ligated	2332	N/A	474	N/A
C15	IP08859	BT022127	n.d., S113I	1105	1880	1017	1017
Cdk7	IP01401	BT022155	match	1392	1457	1059	1059
debcl*	IP01389	BT022157	match	1626	1743	900	900
dmrt11E	NC	N/A	genomic	1134	N/A	1131	N/A
dmrt99B	IP01169	BT022192	match	1533	2343	1530	1530
dys	IP08837	BT022132	3′ extension	2707	3484	2643	2655
E(bx)*	IP08836	BT022131	3′ short	7830	2631	6477	2110
e(y)2	IP01143	BT022196	match	481	468	303	303
eve	NC	N/A	SLIP artifact	1468	N/A	1128	N/A
Fer2	NC	N/A	SLIP artifact	840	N/A	837	N/A
ftz	IP01266	BT022173	match	1758	1758	1230	1230
gcm2	IP01423	BT022152	match	2415	2257	1818	1818
gsb	IP01408	BT022156	match	1452	1652	1281	1281
H15	IP01538	BT022140	match	2555	2606	1980	1980
hang*	NC	N/A	3′ short	7002	N/A	5877	N/A
hbn	IP01393	BT022158	match	1802	1790	1227	1227
Her	IP01491	BT022141	match	450	631	447	447
HGTX*	IP01125	BT022198	match	3049	3229	1539	1539
HLH3B	IP01280	BT022174	match	1353	1434	1128	1128
HLH4C	IP01307	BT022167	match	1424	1456	501	501
HLHm7	IP09063	BT022121	co-ligated	723	1061	558	558
HLHmdelta	IP01594	BT022133	match	1016	1017	519	519
HLHmgamma	IP08862	BT022125	match	842	959	615	615
lbl	IP08853	BT022129	exon variant	1847	1752	1116	882
nau	IP01012	BT022208	exon variant	1534	1450	996	984
nht	IP01149	BT022194	exon variant	780	966	777	735
OdsH	IP01524	BT022139	match	1226	1310	1146	1146
Poxn	IP01592	BT022136	match	2178	2468	1275	1275
Rfx	NC	N/A	3′ short	3943	N/A	2691	N/A
rn	IP01358	BT022161	exon variant	3661	3118	2838	1626
ro	IP01518	BT022142	match	1241	1202	1050	1050
Rpb4^g*	IP01323	BT022168	exon variant	732	609	450	417
sc	IP01419	BT022151	match	1422	1432	1035	1035
sens	IP01345	BT022164	match	2450	2461	1623	1623
sisA	IP01195	BT022187	match	768	770	567	567
Sox14*	NC	N/A	genomic	3159	N/A	2007	N/A
Sox15	IP09065	BT022122	n.d., P319L	3654	3638	2352	2352
Sox21a	IP01552	BT022137	co-ligated	1167	2993	1164	1164
Su(z)2	IP01427	BT022149	co-ligated	6313	2218	4104	1806
sv	IP01047	BT022204	exon variant	4690	920	2382	537
TfIIA-S-2	IP09007	BT022123	co-ligated	2917	4415	1527	1527
TfIIEbeta	IP01109	BT022197	match	1052	1022	876	876
tj	NC	N/A	genomic	1530	N/A	1527	N/A
tll	IP01133	BT022195	match	1938	1942	1356	1356
tun*	IP01285	BT022171	exon variant	4114	3504	3282	2670
zen	NC	N/A	SLIP artifact	1272	N/A	1059	N/A
CG10147	IP01005	BT022207	match	1347	1792	1344	1344
CG10309	IP01015	BT022205	exon variant	2778	3308	2775	2772
CG10348	IP08802	BT022134	5′ extension	1593	2054	1590	1629
CG10431	IP01025	BT022206	5′ extension	2151	3382	2148	2352
CG11085	IP01054	BT022201	exon variant	828	1576	825	885
CG11152	IP01059	BT022202	match	1800	2320	1797	1797
CG11294	IP01065	BT022199	match	946	1021	783	783
CG12029	IP01101	BT022200	5′ extension	503	3021	327	2253
CG13287	NC	N/A	3′ short	1386	N/A	1383	N/A
CG15258	IP01147	BT022193	match	591	702	588	588
CG15336	IP01157	BT022191	antisense	546	705	543	318
CG15710	IP01184	BT022189	match	798	932	795	795
CG15782	IP01192	BT022190	gene merge	455	2383	426	1920
CG1663	IP01201	BT022188	match	1164	1411	1161	1161
CG16779	NC	N/A	co-ligated	5943	N/A	5940	N/A
CG16899	IP01211	BT022185	exon variant	1074	1928	1071	1326
CG17186	IP01220	BT022186	match	1146	1433	1143	1143
CG17195	IP01224	BT022183	5′ extension	737	942	723	849
CG17196	IP01227	BT022184	5′ short, u.s.	831	890	828	495
CG17197	IP01230	BT022181	dicistronic	951	1656	948	870
CG17198	IP01235	BT022182	5′ extension	873	1087	858	897
CG17287	IP01239	BT022179	5′ extension	1017	1801	1014	1080
CG17328	IP01243	BT022180	match	1413	1480	1239	1239
CG17385	IP01247	BT022177	match	837	1192	834	834
CG17568	IP01252	BT022178	3′ extension	1509	1856	1506	1539
CG17801	NC	N/A	5′ & 3′ short	1054	N/A	1035	N/A
CG17803	IP01257	BT022175	5′ extension	1401	2038	1329	1761
CG18476*	IP01261	BT022176	match	2954	2982	2808	2808
CG2120	NC	N/A	genomic	1035	N/A	1032	N/A
CG30417	IP01291	BT022172	match	807	863	804	804
CG30431*	IP01295	BT022169	match	1810	1847	1254	1254
CG30443*	IP01303	BT022170	match	1771	1801	1686	1686
CG31241*	IP01327	BT022165	match	2020	2053	1473	1473
CG31612*	IP01335	BT022163	match	3308	3452	2961	2961
CG32611*	IP08939	BT022126	SLIP artifact	3313	3001	3309	2136
CG32705*	IP01380	BT022162	5′ short	4705	1215	4101	1188
CG32767*	IP01381	BT022159	n.d., frame	7670	5378	3843	3672
CG32772*	IP01388	BT022160	exon variant	2476	3027	1629	1560
CG3485	IP01409	BT022153	intron	993	1677	990	N/A
CG40351*	IP01431	BT022150	3′ short	5846	2006	4924	1750
CG4318	IP01435	BT022147	5′ extension	699	1487	696	708
CG4328	IP01440	BT022148	n.d., frame	1593	1491	1590	816
CG4565	IP01448	BT022145	3′ extension	672	886	669	825
CG4676	NC	N/A	intron	1008	N/A	852	N/A
CG4956	IP01459	BT022146	5′ extension	858	1057	855	906
CG5245	IP01468	BT022143	exon variant	1506	1542	1503	1422
CG6118	IP09048	BT022124	5′ short, u.s.	2832	4052	2829	2646
CG7368	IP08855	BT022130	match	1593	2849	1590	1590
CG7691	IP01563	BT022138	match	852	1306	849	849
CG7963	NC	N/A	co-ligated	966	N/A	963	N/A
CG8089	IP01584	BT022135	n.d., frame	1875	1998	1872	N/A
CG8117	IP08861	BT022128	match	489	792	486	486
CG9793	IP09168	BT022120	intron	1041	1227	1038	N/A

^aGenes represented in our EST collection are indicated by asterisks.

^bClone ID numbers for compromised clones that were not fully sequenced are not reported (NC).

^cClones that were not fully sequenced were not submitted to GenBank and have no accession numbers (N/A).

^dClone classifications relative to the Release 4.1 annotations are indicated. Nucleotide discrepancies (n.d.) are reported with either the corresponding difference in the predicted protein sequence or an indication of a frameshift (n.d., frame). 5′ short clones with upstream in-frame stop codons (5′ short, u.s.), genomic contaminants (genomic), and retained introns (intron) are also indicated by abbreviations. All other classes are reported as described.

^eRelease 4.1 annotated transcript lengths and annotated CDS lengths are reported in nucleotides. For genes with multiple annotated transcripts, the length of the one that most closely matches the cDNA sequence is reported.

^fcDNA insert and ORF lengths are reported in nucleotides. For clones with unfinished sequences, these data are not known with confidence (N/A). For clones classified as ‘co-ligated’, ‘genomic contaminant’ or ‘retained intron’, ORF lengths are not reported (N/A).

^gRpb4 and Ada2A were separate gene annotations in Release 3.1 but are merged into one in Release 4.1. The cDNAs recovered in the two experiments correspond to different Release 4.1 transcript isoforms.