TABLE 2.
Estimated SSC using ACS- and CSI-based methods for proteins with no three-dimensional structural information
| Helix (%) from
|
Sheet (%) from
|
||||||
|---|---|---|---|---|---|---|---|
| BMRB | Protein name | *ACS (1Hα) | *ACS (1HN) | †CSI | *ACS (1Hα) | *ACS (1HN) | †CSI |
| 4840 | Adenylate kinase | 15.31 | 12.65 | 12.70 | 38.11 | 34.58 | 20.40 |
| 4834 | Staphylococcus aureus peptide deformylase | 25.56 | 18.69 | 21.70 | 25.54 | 20.70 | 36.50 |
| 4825 | Recombinant RC-RNase 2 | 27.28 | 18.45 | 15.10 | 25.70 | 19.60 | 39.60 |
| 4821 | DcuS | 17.62 | 15.87 | 20.40 | 33.70 | 30.37 | 19.10 |
| 4795 | Human D187N gelsolin domain 2 | 20.83 | 18.67 | 37.10 | 28.73 | 26.01 | 24.10 |
| 4794 | Human wild-type gelsolin domain 2 | 25.69 | 19.45 | 20.70 | 25.06 | 20.62 | 35.30 |
| 4787 | Apical membrane antigen 1 | 26.10 | 12.95 | 13.10 | 29.25 | 20.36 | 21.30 |
| 4784 | Tyrosine repressor | n.a. | 6.38 | 6.60 | n.a. | 47.90 | 57.40 |
| 4776 | Sud dimer | 14.03 | 11.31 | 19.70 | 40.21 | 36.56 | 42.30 |
| 4771 | Tola3 | 8.18 | 4.57 | 21.70 | 50.72 | 45.64 | 36.80 |
| 4752 | gpnu1-E68 | 11.92 | 4.32 | 16.20 | 51.62 | 39.25 | 39.70 |
| 4735 | Olfactory marker protein | 23.33 | 12.27 | 21.50 | 29.68 | 22.13 | 41.10 |
| 4722 | Shikimate kinase | 9.34 | 6.80 | 19.00 | 47.78 | 43.28 | 32.10 |
| 4716 | Auxilin | 3.53 | 2.78 | 7.70 | 54.01 | 52.33 | 39.00 |
| 4712 | Newt acidic FGF | 16.76 | 10.94 | 5.30 | 30.54 | 26.34 | 45.50 |
| 4711 | RNA-binding protein | n.a. | 13.99 | 31.70 | n.a. | 36.02 | 20.80 |
| 4698 | Transforming growth factor beta type II receptor | n.a. | 13.86 | 4.90 | n.a. | 28.66 | 41.00 |
| 4688 | L18 | 22.46 | 14.66 | 32.40 | 34.98 | 23.48 | 31.50 |
| 4670 | PIN1At | 30.71 | 17.80 | 29.20 | 25.68 | 17.80 | 33.30 |
| 4664 | Lipocalin Q83 | 25.54 | 11.77 | 17.20 | 30.01 | 20.71 | 51.00 |
| 4579 | FYVE domain of EEA1 | n.a. | 20.16 | 18.60 | n.a. | 27.05 | 11.60 |
| 4567 | Catalytic domain of yUBC1 | 19.30 | 13.23 | 24.50 | 37.21 | 28.38 | 38.40 |
| 4558 | YopH-NT monomer | 17.48 | 12.64 | 25.70 | 38.13 | 31.21 | 37.50 |
| 4463 | Ras-binding domain of Byr2 | 21.74 | 18.02 | 31.90 | 30.37 | 23.95 | 33.60 |
| 4447 | p23fyp | 20.93 | 19.80 | 33.30 | 26.97 | 25.85 | 29.80 |
| 4353 | p13 C-terminal domain | 23.81 | 16.69 | 15.90 | 26.84 | 21.82 | 38.90 |
| 4335 | Calerythrin | 5.88 | 2.21 | 11.40 | 54.90 | 48.68 | 60.20 |
| 4313 | E2 | 24.09 | 17.73 | 41.70 | 30.19 | 20.94 | 21.10 |
| 4294 | Human MBF1(57-148) core domain | 5.96 | 4.99 | 15.20 | 50.59 | 48.55 | 42.40 |
| 4271 | Calcium binding protein from Entamoeba histolytica | 11.00 | 8.70 | 13.40 | 44.27 | 41.27 | 48.50 |
| 4239 | f29-SSB bacteriophage | 23.69 | 14.46 | 15.30 | 28.27 | 21.90 | 43.50 |
| 4147 | Cold shock domain | 14.95 | 6.93 | 8.90 | 32.65 | 27.95 | 44.30 |
| 4136 | Escherichia coli multidrug Resistance protein E | n.a. | 3.46 | 1.80 | n.a. | 52.96 | 68.20 |
| 4132 | Human ubiquitin-conjugating enzyme | 18.15 | 12.68 | 19.90 | 38.07 | 30.17 | 33.10 |
| 4027 | S. aureus DHFR(F98Y)-NADPH-TMP ternary complex | 17.36 | 17.00 | 22.20 | 26.64 | 25.96 | 44.90 |
| 1583 | Micrococcal nuclease | n.a. | 20.59 | 7.30 | n.a. | 23.89 | 48.90 |
*
Secondary structure content estimated using the correlation listed in Table 1.
†
Secondary structure content estimated using probability-based protein secondary structure identification (Wang and Jardetzky, 2002).
n.a.: not determined due to absence of chemical shift information.