TABLE 1.
Kinetic parameters for the butyl-FLIP activity of B. cereus PI-PLC obtained by fitting to the two-site model
Data set | Curve shape | No. of fitted parameters | diC6PC (mM) | KS (mM) | α′ |
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kp (s−1) | β′ | KA (mM) | α | β |
---|---|---|---|---|---|---|---|---|---|---|---|
Fig. 4 A Solid line | Sigmoidal | 5 | 0 | 0.5 | 0.2 | 0.15 | 240 | 1.4 | — | — | — |
Fig. 4 B Dotted line | Hyperbolic (approx.) | 3 | 1.07 | 0.5 | 0.2 | 0.15 | 218 | 1.4 | 0.2 | 0.03 | 1.0 |
Fig. 4 B Solid line | Hyperbolic (approx.) | 7 | 1.07 | 0.5 | 0.1 | 0.04 | 220 | 1.5 | 0.2 | 0.02 | 0.9 |
Fig. 5 | Hyperbolic | 7 | 0–1 | 0.5 | 0.2 | 0.15 | 100 | 1.4 | 0.2 | 0.02 | 1.0 |
The data of Fig. 4 were simulated with a five-parameter (KS, α′, β′, kp) fit using Eq. 1, or equivalently using Eq. 5 with [A] = [diC6PC] = 0. KA was held constant at 0.2 mM. Fig. 4 B was simulated with Eq. 5 by two methods. In the first method, the four parameters (KS, α′,
β′) were fixed at values arrived at for Fig. 4 A, and only three parameters (kp, α, β) were allowed to vary. In the second method, all seven parameters (KS, α′,
β′, kp, α, β) were allowed to vary. The fit to the data of Fig. 5 was carried out with Eq. 5, varying the same seven parameters, and [S] = 8.6 μM butyl-FLIP. Values were arrived at by visual curve fitting and are thus semiquantitative. Estimated errors are 10% for KS and 20% for α′,
β′, α, β. The variation in kp was larger due to differences in enzyme activity from different preparations (see text).