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. 2003 Jun;84(6):3547–3563. doi: 10.1016/S0006-3495(03)75088-7

FIGURE 5.

FIGURE 5

Variations of the numbers of direct hydrogen-bonding interactions (A), water-bridged interactions (B), and hydrophobic interactions (C) between α-APA and HIV-1 RT in the SMD simulation. Regions I, II, and III denote the three phases in the unbinding process of α-APA from the inhibitor-binding pocket. The calculation of interactions is recorded every 10 ps.