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. 2003 Jun;84(6):3564–3582. doi: 10.1016/S0006-3495(03)75089-9

TABLE 1.

Summary of simulations carried out in this work

Name of simulation Length of simulation (ns) Loop E from: Presence of ions
EbacMg 9.7 E. coli 5 Mg2+ and 10 Na+
EbacNa1 8.8 E. coli 20 Na+
EbacNa2 8.8 E. coli 20 Na+
EchlMg 10 Spinach chloroplast 5 Mg2+ and 10 Na+
EchlNa 7.4 Spinach chloroplast 20 Na+
Nosalt-Ebac 10 E. coli Neutralising plasma
Nosalt-Echl 5 Spinach chloroplast Neutralising plasma
Ebac-refold with Mg2+* 4 E. coli 5 Mg2+ and 10 Na+
Ebac-refold with Na+* 6 E. coli 20 Na+
Ebac-relax with Na+ 3.5 E. coli 20 Na+
400K_Ebac-ntp 2.5 E. coli 5 Mg2+ and 10 Na+
400K_Echl-ntp 3 Spinach chloroplast 5 Mg2+ and 10 Na+
400K_Echl-ntv 5 Spinach chloroplast 5 Mg2+ and 10 Na+
*

This simulation has been started with partly unfolded geometry obtained at 1 ns of the no-salt simulation.

This simulation has been started with narrow deep groove geometry obtained in the course of the Ebac-refold with Mg2+ simulation.

Elevated temperature simulation.