TABLE 3.
Lattice | Constraints* | W(N)* | Choices/residue | Bits/residue | |
---|---|---|---|---|---|
2D Square | None | 4N | 4 | 2 | |
No reversal | 3N | 3 | 1.58 | ||
Self-avoiding | 0.103 (2.691N) | 2.69 | 1.43 | ||
Square Hamilton self-avoiding | 0.269 (1.399N) | 1.4 | 0.48 | ||
3D Cubic | None | 6N | 6 | 2.58 | |
No reversal | 5N | 5 | 2.32 | ||
Self-avoiding (Chan and Dill, 1990) | 0.293 (4.782N) | 4.78 | 2.26 | ||
Hamilton walk (Pande et al., 1994) | e−4.3±1.2 (1.86N) | 1.86 | 0.90 | ||
Flory, mean field (Flory, 1953) | 1.84 | 0.88 | |||
3D Tetrahedral | None | 4 | 2 | ||
No reversal | 3 | 1.58 | |||
Self-avoiding (Wang et al., 1999) | 1.72 | 0.78 | |||
Off lattice | |||||
Stochastic chains | Fit to extreme value distribution (Feldman and Hogue, 2002) | 1.2–2.0 | |||
Protein backbone | Native → Compact (Dill, 1985) | 1.7 | 0.76 | ||
Protein backbone + side chain | Native → Unfolded (Cooper, 1999) | 7.5–20.5 | 2.9–4.4 |
W(N) for N ≫ 1.