TABLE 6.
Prediction of potential β-strands for small nuclear ribonucleoprotein Sm D3 (T59 from CASP 3)
| 1234567890 | 1234567890 | 1234567890 | 1234567890 | 1234567890 |
|---|---|---|---|---|
| MSIGVPIKVL | HEAEGHIVTC | ETNTGEVYRG | KLIEAEDNMN | CQMSNITVTY |
| HTHT------ | ---NTNHHBH | NBTBTNHHNT | NHHNBNTTHT | HNHTTHBHBH |
| ---------- | ------OOOO | OO----OOOO | OO-OO----- | OOOO-OOOO- |
| ---------- | -----XXXXX | X----XXXX- | XXXX----XX | XXX--XXXXX |
| 1234567890 | 1234567890 | 12345 | ||
| RDGRVAQLEQ | VYIRGCKIRF | LILPD | ||
| NTTNHBNHNN | HHHN---HNH | HHHTT | ||
| ----OOOO-O | OOO------O | OO--- | ||
| X-XXXXX--- | XXXX---XXX | XXX-- |
The first row provides the single letter code for the amino acid sequence. The second row provides the classification, of ℋ, ℬ, 𝒯, and 𝒩 residues. The third row provides the location of the experimentally determined strands as depicted by contiguous blocks of O characters. A contiguous block of X characters shows the predicted β-strands in the fourth row.