TABLE 1.
Parameter values used in endosomal sorting model that are common to all models
| Parameter | Description | Base value |
|---|---|---|
| Nav | Avogadro's number | 6.023 × 1023 #/mol |
| Vtotal | Total endosomal volume | 3 × 10−14 L |
| η | Ratio of volume in tubular compartments to vesicular compartments | 0.67 |
| kst | Tubular sorting rate constant | 0.53 min−1 |
| ksv | Vesicular rate constant | 0.06 min−1 |
| κ | Partition coefficient accounting for excluded volume in tubules due to ligand size | 0.81 |
| ξ | Fraction of internalized ligand nonspecifically endocytosed | 0 |
| γ | Transport rate constant of receptors out of vesicular compartment into tubular compartment | 1 min−1 |
| kh | Degradation rate constant | 0.09 min−1 |
| kx | Recycling rate constant | 0.15 min−1 |
| kon | EGF binding rate constant | 5 × 107 M−1 min−1* |
| koff | EGF dissociation rate constant from EGFR | 0.5 min−1* |
| kc | EGF-EGFR/HER2 dimerization rate constant | 1 × 10−3 (#/cell)−1 min−1 |
| ku,R1LR2 | EGF-EGFR/HER2 uncoupling rate constant | 0.1 min−1† |
| kc,R1E | EGF-EGFR/ERC coupling rate constant | 1 × 10−3 (#/cell)−1 min−1 |
| ku,R1E | EGFR-ERC uncoupling rate constant | 0.1 min−1 |
| ERCtotal | Total number of ERCs | 10,000 #/cell |
| IR1L | Input flux of EGF-EGFR complexes | Varied |
| IR1LR2 | Input flux of EGF-EGFR/HER2 | Varied |
All values come from the original ERC sorting model (French and Lauffenburger, 1996), except as noted.
Experimentally measured (data not shown).
Parameter value from Hendriks et al. (2003a).