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. 2003 Nov;85(5):2900–2918. doi: 10.1016/S0006-3495(03)74712-2

TABLE 5.

Various average properties of right- and left-handed GpA dimers

Energy, kcal/mol
Buried area,* Å2 Tilt angle, degree 𝒲 Uint Uvdw 𝒲elec ΔGnp
Right-handed configuration
 dimer 186.5 ± 30.7 5.7 ± 2.7 332.4 ≥ 19.8 758.2 ± 20.5 −128.8 ± 10.2 −335.3 ± 10.5 38.3 ± 1.8
 monomer1 21.8 ± 3.7 194.7 ± 13.9 379.0 ± 14.2 −38.6 ± 6.9 −166.1 ± 7.5 20.3 ± 1.9
 monomer2 21.6 ± 3.9 194.6 ± 13.8 379.2 ± 14.2 −38.1 ± 7.1 −166.7 ± 7.7 20.2 ± 1.8
Left-handed configuration
 dimer 188.0 ± 82.1 19.7 ± 4.1 321.7 ± 20.0 765.9 ± 20.4 −137.1 ± 9.9 −341.2 × 10.3 34.3 ± 1.7
 monomer1 26.5 ± 3.5 188.1 ± 13.9 382.1 ± 14.2 −44.0 ± 6.7 −166.7 ± 6.8 16.6 ± 1.4
 monomer2 18.8 ± 0.5 196.4 ± 14.2 383.8 ± 14.7 −38.5 ± 7.0 −169.1 ± 7.4 20.2 ± 1.4

The average and fluctuations of right- and left-handed GpA dimers were calculated from 2.6-ns trajectories (after 0.6 ns) for each run. The trajectory for the D2 simulation in Table 3 was used for the right-handed configuration.

*

The buried surface area was calculated using the contact surface defined by the van der Waals radii.

The tilt angle is defined the same as in Table 3.

All the energy terms are defined as in Tables 1 and 2.