TABLE 2.
kr − kl (#/ns) | kr + kl (#/ns) | kl (#/ns) | kr (#/ns) | kr/kl | ||
---|---|---|---|---|---|---|
sim1 | −3.9 ± 0.3 | 5.7 ± 1.4 | 4.8 ± 0.7 | 0.9 ± 0.7 | 0.19 | 0.27 |
sim2 | −1.9 ± 0.6 | 5.1 ± 1.4 | 3.5 ± 0.8 | 1.6 ± 0.8 | 0.46 | 0.52 |
sim3 | 2.0 ± 0.3 | 4.0 ± 0.4 | 1.0 ± 0.3 | 3.0 ± 0.3 | 3.1 | 1.9 |
sim4 | 2.3 ± 0.3 | 4.6 ± 0.4 | 1.1 ± 0.2 | 3.5 ± 0.2 | 3.1 | 3.7 |
For each channel, the trajectory of the collective coordinate X for water molecules in the defined region (length L = 15 Å) was obtained as described in the text. kr − kl was calculated from the total displacement of X in 4 ns, according to Eq. 19. To calculate kr + kl, the 4-ns trajectory of X was divided into 20 subtrajectories, each of 200 ps duration. For each t, the variance of the displacements in the 20 subtrajectories during time t was computed, and kr + kl was calculated from the slope of the variance-t curve, according to Eq. 20. kr, kl, and kr/kl were obtained from kr − kl and kr + kl. The last column (* of the table is the predicted value of kr/kl, calculated from exp(−Δμ/kBT) (Eq. 6), using T = 310 K and Δμ taken from Table 1.