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. 2004 Mar;86(3):1521–1531. doi: 10.1016/S0006-3495(04)74220-4

FIGURE 4.

FIGURE 4

ATR amide I bandshapes for proteated gramicidin A predicted from Eqs. 5 and 6 and the normal mode analysis of Naik and Krimm (1986a), (A) for the β6.3 single-helix conformation, and (B) for the ↑↓β7.2 double-stranded helix conformation. The thick film approximation is used with a helix tilt of γeff = 39° (〈cos2γ〉 = 0.60) to obtain the ATR absorbance with parallel (solid line) and perpendicular (dashed line) polarized radiation. (Dotted lines are corresponding calculations with the thin film approximation, γeff = 30°; 〈cos2γ〉 = 0.75). Each component mode has a Lorentzian lineshape with FWHH = 15 cm−1.