Table 2. The genomic variants included in the secondary analysis and their prevalence in the UKBB.
| Gene | Variant ID | Directly genotyped or imputed | Imputation score R 2a | Chromosome number | Position | Allele 1 | Allele 2 | Minor allele UKBB | MAF UKBB (unrelated Europeans) |
|---|---|---|---|---|---|---|---|---|---|
| NAT2 | rs1041983 | Imputed | 0.999 | chr8 | 18 257 795 | C | T | T | 0.33 |
| NAT2 | rs1799930 | Genotyped | N/A | chr8 | 18 258 103 | G | A | A | 0.30 |
| DPP6 | rs6977820 | Genotyped | N/A | chr7 | 154 072 020 | T | C | T | 0.28 |
| COQ2 | rs4693075 | Genotyped | N/A | chr4 | 84 192 168 | G | C | G | 0.38 |
| MC4R | rs489693 | Genotyped | N/A | chr18 | 57 882 787 | C | A | A | 0.33 |
| GATM | rs1346268 | Imputed | 1 | chr15 | 45 673 029 | T | C | C | 0.26 |
| GATM | rs1719247 | Imputed | 0.995 | chr15 | 45 620 985 | C | T | T | 0.26 |
| SLCO1B1 | rs4149056 | Genotyped | N/A | chr12 | 21 331 549 | T | C | C | 0.15 |
| ANKK1 | rs1800497 | Genotyped | N/A | chr11 | 113 270 828 | G | A | A | 0.21 |
| CYP2C9 | rs1057910 | Genotyped | N/A | chr10 | 96 741 053 | A | C | C | 0.06 |
R 2 is the squared correlation between input genotypes and imputed dosages (that is, true and inferred genotypes). MAF = minor allele frequency. N/A = not applicable (imputation score applies only to imputed variants). UKBB = UK Biobank.