TABLE 7.
DNA entropy determined using Schlitter and Andricioaei-Karplus methods for the four DNA structures sampled here
SSchlitter | SKarplus | |
---|---|---|
L-WWWW | 2.22 | 2.07 |
0.89 | 0.82 | |
0.44 | 0.41 | |
L-IIIII | 2.23 | 2.07 |
0.88 | 0.81 | |
0.43 | 0.40 | |
H-WWWW | 2.29 | 2.14 |
0.93 | 0.85 | |
0.46 | 0.43 | |
H-IIII | 2.24 | 2.09 |
0.88 | 0.81 | |
0.44 | 0.40 |
In all the cases, the extrapolation (t = ∞) technique developed by Harris et al. (2001) (see Methods) was used. All values are in kcal/mol K. SEs in the fitted values are always ∼0.1 kcal/mol K. Results for the entire DNA (top numbers within each group); results for the AATT track (middle numbers); and results for the central AT step (bottom numbers).