TABLE 2.
WHATCHECK Z-scores for quality assessment and statistical analysis of Glut1, GlpT, and LacY
| Structure Z-score
|
RMS Z-scores
|
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Structure | PQ | RPA | χNR | BBC | BL | BA | ΩR | SCP | IDD | IOD |
| Glut1* | −2.0 | −0.8 | −2.7 | −9.5 | 1.0 | 1.4 | 0.9 | 1.5 | 1.4 | 1.3 |
| GlpT† | −2.3 | −5.0 | −2.2 | −8.8 | 0.7 | 1.0 | 0.5 | 1.1 | 1.0 | 1.2 |
| LacY‡ | −2.4 | −7.9 | −4.7 | −7.8 | 0.6 | 0.8 | 0.2 | 0.3 | 0.6 | 1.2 |
PQ, second-generation packing quality; RPA, Ramachandran plot appearance; χNR, χ−1/χ−2 rotamer normality; BBC, backbone conformation; BL, bond lengths; BA, bond angles; Ω, omega angle restraints; SCP, side-chain planarity; IDD, improper dihedral distribution; and IOD, inside/outside distribution.
PDB No. 1SUK.
PDB No. 1PW4.
PDB No. 1PV6.