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. 2004 Aug 23;87(5):2990–2999. doi: 10.1529/biophysj.104.047886

TABLE 2.

WHATCHECK Z-scores for quality assessment and statistical analysis of Glut1, GlpT, and LacY

Structure Z-score
RMS Z-scores
Structure PQ RPA χNR BBC BL BA ΩR SCP IDD IOD
Glut1* −2.0 −0.8 −2.7 −9.5 1.0 1.4 0.9 1.5 1.4 1.3
GlpT −2.3 −5.0 −2.2 −8.8 0.7 1.0 0.5 1.1 1.0 1.2
LacY −2.4 −7.9 −4.7 −7.8 0.6 0.8 0.2 0.3 0.6 1.2

PQ, second-generation packing quality; RPA, Ramachandran plot appearance; χNR, χ−1/χ−2 rotamer normality; BBC, backbone conformation; BL, bond lengths; BA, bond angles; Ω, omega angle restraints; SCP, side-chain planarity; IDD, improper dihedral distribution; and IOD, inside/outside distribution.

*

PDB No. 1SUK.

PDB No. 1PW4.

PDB No. 1PV6.