TABLE 4.
Helix-helix interactions; pairs of residues separated by 3–5 Å
Helix intersection | Residue pairs |
---|---|
H2–3 | 87–95 |
H2–4 | 122–68, 123–68, 123–71, 123–64, 123–67, 126–68, 126–69, 126–72, 127–71, 127–75, 129–72, 130–72, 130–76, 131–75, 133–72, 134–83, 135–83, 135–87, 139–87, 142–87, 142–88 |
H2–7 | 290–65 |
H2–11 | 405–77, 409–77, 409–74, 412–70, 412–72, 412–73, 412–69, 416–66, 416–67, 416–70, 420–63, 420–66 |
H4–5 | 148–151, 152–144, 152–141, 152–145, 155–144, 156–141, 156–144, 159–140, 159–144, |
H5–7 | 289–172 |
H5–8 | 306–172, 307–173, 307–176, 310–169, 310–173, 310–172, 311–169, 311–173, 313–169, 314–165, 314–169, 317–165, 318–165, 318–166, 322–162 |
H7–8 | 306–289, 309–288 |
H7–10 | 369–284, 369–288, 372–284, 373–284, 373–285, 376–277, 376–280, 377–281, 380–277, 381–278, 384–270, 384–274, 387–270, 388–270, 388–267, 388–271 |
H7–11 | 403–271, 403–274, 406–271, 407–274, 407–275, 407–278, 408–278, 410–275, 411–275, 411–278, 411–279, 412–282, 414–279, 415–283, 415–279, 420–287, 279–411HB |
H8–10 | 366–308, 366–309, 366–312, 369–309, 369–313, 370–316, 373–317, 373–313, 374–320, 375–320, 379–320, 379–324, 365–305HB |
H10–11 | 399–388, 400–385, 400–388, 400–389, 400–386, 402–388, 403–385, 403–388, 404–385 |
Bold, pathogenic residues; italicized, residues crucial for transport. All interactions are hydrophobic except those labeled HB (hydrogen bond). Interactions involving helices 1, 3, 6, and 9 omitted (data available upon request).