TABLE 1.
Statistics for crystal structures of staphylococcal nuclease variants
Crystal structure label | C1 | C2 | C3 | C4* | C5 | C6 |
---|---|---|---|---|---|---|
SNase variant | Wild-type | PHS | Δ+PHS/V66K | WT/V66K | PHS/V66E | PHS/V66E |
PDB accession code | 1EY0 | 1EY8 | — | 2SNM | — | 1U9R |
Temperature (K) | 297 | 297 | 95 | 298 | 95 | 296 |
pH | 7.0 | 7.0 | 8.0 | 8.0 | 6.0 | 6.4 |
Resolution limit (Å) | 1.60 | 1.75 | 2.1 | 1.97 | 2.1 | 2.1 |
R-value | 0.20 | 0.19 | 0.19 | 0.18 | 0.19 | 0.19 |
Free R-value | 0.26 | 0.24 | 0.22 | — | 0.27 | 0.22 |
Residues | 6–141 | 7–141 | 7–43, 50–141 | 7–141 | 7–141 | 7–44, 51–141 |
Non-hydrogen protein atoms | 1091 | 1076 | 1025 | 1085 | 1079 | 1031 |
Water oxygen atoms | 82 | 74 | 19 | 41 | 64 | 31 |
Median B-factor for protein atoms (Å2) | 34.9 | 34.4 | 31.1 | 22.9 | 32.6 | 32.1 |
Median B-factor for water oxygens (Å2) | 48.8 | 50.7 | 27.2 | 34.1 | 30.8 | 37.3 |
Reference | Chen et al., 2000 | Chen et al., 2000 | García-Moreno et al., 1997 | Stites et al., 1991 | Dwyer et al., 2000 | This work |
This structure also contains a Ca2+ ion and a 2′-deoxythymidine 3′,5′-diphosphate inhibitor in the active site.