Table 1.
Hairpin* | ΔGet†‡, eV | ΔGinj‡§, eV | β¶, Å−1 |
---|---|---|---|
G-SA‖ | −0.20 | 0.25 | 0.71 ± 0.07 |
Z-PA** | −0.24 | 0.50 | 1.1 ± 0.15 |
G-PA** | 0.05 | 0.45 | 0.92 ± 0.09 |
I-PA** | 0.21 | 0.29 | 0.8 ± 0.2 |
See Fig. 1 for structures.
Calculated using Eq. 5 and the electrochemical data in Fig. 1. The difference in equilibrium oxidation potentials for G+Z vs. GZ+ is 0.19 ± 0.03 eV, smaller than the value 0.29 eV obtained from the electrochemical oxidation potentials for single nucleotides (Fig. 1; ref. 27).
Estimated error ± 0.05 eV.
See Fig. 1.
Calculated from the slopes in Fig. 3. Errors are estimated from the kinetic data.
The value of β = 0.71 Å−1 was obtained for G located in the polyA strand. A slightly smaller value of β = 0.64 ± 0.1 was obtained for G located in the polyT strand (29, 30).
Data from this study.