TABLE 4.
Fragment Name | Insertion site | Inserted sequence | Insertion size, bp | μ-Decrement | Average τ-decrement* |
---|---|---|---|---|---|
204B† | 1926 | AGCTA | 5 | −3 | −4 ± 5 |
204C† | 1942 | AGCTA | 5 | −3 | −4 ± 3 |
205 | 1988 | CCATCGATGG | 10 | −24 | −17 ± 2 |
212 | 1913 | TGCCATCGATGG | 13 | −13 | −5 ± 1 |
213 | 1950 | TTCCATCGATGGAA | 14 | −12 | −6 ± 2 |
217 | 1988 | Nested ClaI linker dimers‡ | 22 | −24 | −8 ± 1 |
224 | 1913 | Nested ClaI linker dimers‡ | 25 | −13 | −2 ± 2 |
225 | 1950 | Nested ClaI linker dimers‡ | 26 | −14 | +1 ± 3 |
227 | 1913, 1950 | Two insertions§ | 14 | −7 | +1 ± 2 |
231 | 1913 | Tandem ClaI linker trimers¶ | 32 | −17 | −6 ± 1 |
236 | 1913 | Nested ClaI linker trimers‖ | 37 | −13 | −2 ± 2 |
Average τ-decrement observed in buffers B, C, and E and standard deviation.
Also, A6 and T7 replaced by TCTAGA.
Inserted sequence, CCATCGCCATCGATGGCGATGG.
Inserted sequences, CCATCGATGGCATG at 1913 and TTCCATCGATGGAA at 1950.
Inserted sequence, GCCCATCGATGGCCATCGATGGCCATCGATGG.
Inserted sequence, ATGCCATCGCCATCGCCATCGATGGCGATGGCGATGG.