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. 2004 Nov 19;88(2):1191–1206. doi: 10.1529/biophysj.104.039834

TABLE 4.

Characterization of insertion derivatives

Fragment Name Insertion site Inserted sequence Insertion size, bp μ-Decrement Average τ-decrement*
204B 1926 AGCTA 5 −3 −4 ± 5
204C 1942 AGCTA 5 −3 −4 ± 3
205 1988 CCATCGATGG 10 −24 −17 ± 2
212 1913 TGCCATCGATGG 13 −13 −5 ± 1
213 1950 TTCCATCGATGGAA 14 −12 −6 ± 2
217 1988 Nested ClaI linker dimers 22 −24 −8 ± 1
224 1913 Nested ClaI linker dimers 25 −13 −2 ± 2
225 1950 Nested ClaI linker dimers 26 −14 +1 ± 3
227 1913, 1950 Two insertions§ 14 −7 +1 ± 2
231 1913 Tandem ClaI linker trimers 32 −17 −6 ± 1
236 1913 Nested ClaI linker trimers 37 −13 −2 ± 2
*

Average τ-decrement observed in buffers B, C, and E and standard deviation.

Also, A6 and T7 replaced by TCTAGA.

Inserted sequence, CCATCGCCATCGATGGCGATGG.

§

Inserted sequences, CCATCGATGGCATG at 1913 and TTCCATCGATGGAA at 1950.

Inserted sequence, GCCCATCGATGGCCATCGATGGCCATCGATGG.

Inserted sequence, ATGCCATCGCCATCGCCATCGATGGCGATGGCGATGG.