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The hydrophobicity matrix MIJ
| I | II | III | ||
|---|---|---|---|---|
| I | Ala | 0.0 | 0.1 | 0.1 |
| II | Ile, Leu, Met, Pro, Val | 0.9 | 2.8 | |
| III | Phe, Trp, Tyr | 3.2 |
Hydrophobic amino acids are divided into three categories. The matrix MIJ represents the size of hydrophobicity interaction when an amino acid of type I is in contact with an amino acid of type J.
