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. 2005 Jan 21;88(4):2472–2493. doi: 10.1529/biophysj.104.051938

TABLE 2.

Comparison of 305-K equilibrium ensemble simulation results to experimental values

AMBER-94
AMBER-GS
AMBER-99
AMBER-99φ
Metric A21 Fs A21 Fs A21 Fs A21 Fs Experimental (Fs)
v* 0.35 0.36 0.68 0.70 0.06 0.06 0.26 0.26 0.036
w* 1.66 1.67 3.70 3.70 0.70 0.70 1.27 1.26 ∼1.3
〈% 310eq 6.40 6.40 0.15 0.04 16.0 16.5 17.8 17.3 ∼16%
Inline graphic 0.15 0.11 0.12 0.08 0.00 0.00 0.06 0.05 0.06
τcoil (ns)〉 0.21 0.24 0.32 0.38 0.81 0.89 0.26 0.28 0.3
Rg (Å)〉eq 9.32 9.40 9.56 9.55 7.32 7.97 9.02 9.24 9
RMSD (Å)〉eq 3.60 4.00 1.88 2.59 7.85 7.68 5.13 5.31
*

Calculated using 30° cutoffs as described in the text.

Measured at ∼283 K.