TABLE 2.
Comparison of 305-K equilibrium ensemble simulation results to experimental values
AMBER-94
|
AMBER-GS
|
AMBER-99
|
AMBER-99φ
|
||||||
---|---|---|---|---|---|---|---|---|---|
Metric | A21 | Fs | A21 | Fs | A21 | Fs | A21 | Fs | Experimental (Fs) |
v* | 0.35 | 0.36 | 0.68 | 0.70 | 0.06 | 0.06 | 0.26 | 0.26 | 0.036 |
w* | 1.66 | 1.67 | 3.70 | 3.70 | 0.70 | 0.70 | 1.27 | 1.26 | ∼1.3 |
〈% 310〉eq | 6.40 | 6.40 | 0.15 | 0.04 | 16.0 | 16.5 | 17.8 | 17.3 | ∼16% |
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0.15 | 0.11 | 0.12 | 0.08 | 0.00 | 0.00 | 0.06 | 0.05 | 0.06 |
〈τcoil (ns)〉 | 0.21 | 0.24 | 0.32 | 0.38 | 0.81 | 0.89 | 0.26 | 0.28 | 0.3 |
〈Rg (Å)〉eq | 9.32 | 9.40 | 9.56 | 9.55 | 7.32 | 7.97 | 9.02 | 9.24 | 9† |
〈RMSD (Å)〉eq | 3.60 | 4.00 | 1.88 | 2.59 | 7.85 | 7.68 | 5.13 | 5.31 | – |
Calculated using 30° cutoffs as described in the text.
Measured at ∼283 K.