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. 2005 Mar 11;88(5):3072–3082. doi: 10.1529/biophysj.104.050286

FIGURE 1.

FIGURE 1

Root-mean-square deviation (RMSD) of double mutant HIV-1 IN (T66I/M154I) backbone atoms with respect to the equilibrated conformation as a function of time. The inset figure shows the RMSD calculated for the protein backbone atoms after removing the contribution of the catalytic loop (residues 138–149). S1 stands for simulation 1 (black solid line); S2 stands for simulation 2 (black dotted line); S3 stands for simulation 3 (gray solid line); and S4 stands for simulation 4 (gray dotted line).