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. 2005 Feb 24;88(5):3455–3465. doi: 10.1529/biophysj.104.054148

FIGURE 3.

FIGURE 3

Comparison of lowest-energy docked structures (blue) from the four Autodock simulations with the starting structure for the respective simulations (red). Guanosine bases are shown in green. The dye structures and guanosine bases are shown in bold. All other aptamer atoms are colored by atom type. Hydrogens have been removed for clarity. The aptamer and dye structures were created as described in Materials and Methods.