Table 3.

Diversity estimates and results of tests statistics for selective sweeps

Sequenced fragment	Gene	No. of silent sites	No. of individuals	Nucleotide diversity, π	Tajima's D*	Fu and Li's D	Divergence	P value, H test	P value, HKA test†
Africa
frag.1	period/CG2650	861	32	0.0178	−0.569	−0.446	0.058	0.452	—
frag.2	100G10.2	781	28	0.0169	−0.677	−1.007	0.074	0.368	0.66
crm‡	cramped	1210	7	0.0233	−0.199	0.411	0.117	0.234	0.305
syx4	syxntaxin4	657	25	0.0072	−0.750	−1.352	0.071	0.241	0.101
frag.3	Noncoding	1279	16	0.0122	−0.596	−1.077	0.063	0.38	0.414
frag.4	Noncoding	824	11	0.0076	−0.741	−1.146	0.045	0.551	0.392
frag.5	Noncoding	992	14	0.0127	−0.765	−1.041	0.074	0.2462	0.372
frag.6	CG3588	459	14	0.0325	−0.191	−0.039	0.135	0.1752	0.693
frag.7	CG3592	431	18	0.0278	0.587	−0.769	0.155	0.6409	0.343
Europe
frag.1	period/CG2650	861	30	0.0090	0.122	−0.161	0.059	0.099	—
frag.2	100G10.2	781	28	0.0062	−0.135	0.699	0.073	0.070	0.295
crm	cramped	1210	27	0.0030	−0.730	1.824§	0.120	0.003	0.001
syx4	syxntaxin4	657	29	0.0009	−0.338	−0.296	0.074	0.064	0.002
frag.3	Noncoding	1279	28	0.0036	1.270	0.651	0.066	0.100	0.015
frag.4	Noncoding	824	13	0.0052	1.229	0.549	0.048	0.440	0.322
frag.5	Noncoding	992	10	0.0012	0.131	0.915	0.073	0.050	0.003
frag.6	CG3588	459	9	0.0026	−0.788	−0.806	0.147	0.093	0.005
frag.7	CG3592	431	12	0.016	1.01	1.634¶	0.159	0.114	0.212

^*Tajima's D was in all loci nonsignificant (P > 0.05). 

^† HKA test for all fragments was performed with frag.1 as the control locus. 

^‡ Two fragments covering the fixed differences between African and non-African flies (≈800 bp each) were sequenced in an additional 22 African individuals (Kenya and Zimbabwe) to confirm that the intronic and the replacement substitutions were fixed between African and non-African flies. 

^§ P (Fu and Li's D) < 0.02. 

^¶ P (Fu and Li's D) < 0.05.