Table 1.
Patient characteristics
| BRAFV600E mutated PDO | Gender | Confirmation of BRAFV600E mutation | Confirmation of BRAFV600E mutation*3 | MMR-status*4 | Histology | Grading | Tumor location | Origin of the cohort | Organ of origin of the PDO | Tumor stage at the time of establishment | Sites of metastasis |
|---|---|---|---|---|---|---|---|---|---|---|---|
| HCT153 | F | V600E*1 | V600E | dMMR | tubular | NA | right | Japan | colon | IV | multiple LN |
| (transverse) | |||||||||||
| HCT156 | F | V600E*1 | V600E | dMMR | tubular | NA | right | Japan | colon | IIIb | NA |
| (transverse) | |||||||||||
| HCT161 | F | V600E*1 | V600E | dMMR | poorly differentiated | G3 | right | Japan | colon | II | NA |
| (transverse) | |||||||||||
| HCT162 | F | V600E*1 | V600E | dMMR | tubular | NA | right | Japan | colon | IV | liver |
| (cecum) | |||||||||||
| HCT166 | F | V600E*1 | V600E | dMMR | tubular | NA | right | Japan | colon | IIIa | NA |
| (ascending) | |||||||||||
| HCT178 | F | NA | V600E | dMMR | poorly differentiated | G3 | right | Japan | colon | III | NA |
| (cecum) | |||||||||||
| OT212 | F | V600E*2 | V600E | pMMR | poorly differentiated | G3 | right | Berlin | colon | IV | NA |
| (ascending) | |||||||||||
| OT261 | F | V600E*2 | V600E | dMMR | tubular | G1 | right | Berlin | colon | I | NA |
| (ascending) | |||||||||||
| M2 | F | V600E*2 | V600E | pMMR | mucinous | G3 | right | Berlin | liver | IV | liver |
| (cecum) | |||||||||||
| ICP_CRC_01 | M | V600E*2 | V600E | pMMR | mucinous | NA | right | Berlin | bronchial LN | IV | lung, LN, liver, peritoneum |
| (transverse) |
HCT human cancer tissue, ICP informative Charite patient, IHC immunohistochemistry, LN lymph node, M Male, dMMR deficient DNA mismatch repair, pMMR proficient Mismatch Repair, NA not available, OT Oncotrack, PDO patient-derived organoid
*1 at time of PDO establishment by Sanger Sequencing, *2 at time of PDO establishment by WES, *3 at time of PDO expansion by WES and RNA Seq,
*4 at time of PDO expansion by IHC, dMMR: deficient DNA mismatch repair, pMMR:Proficient Mismatch Repair; CRC: colorectal cancer; F:Female;