TABLE 1.
Strain designation | Molecular profile by:a
|
|||
---|---|---|---|---|
PFGE (65% similarity) | Box (70% similarity) | MLRTc
|
||
CC | RT | |||
AU2718 | P6 | B1 | 6 | 3 |
AU0199 | P6 | B2 | 6 | 4 |
AU0604, AU0824 | s | B1 | 6 | 6 |
AU2105 | s | B1 | 6 | 7 |
AU2107 | s | B1 | 6 | 8 |
AU1742 | s | B1 | 6 | 11 |
HI2812, HI2814, HI2808, HI2824, HI2817, HI2816, HI2815, HI2811, HI2813, HI2825 | P5 | B3 | 6 | 17 |
AU2567 | P8 | B1 | 6 | 21 |
AU2638, AU1528, AU1529 | P8 | B1 | 6 | 23 |
AU2091 | P8 | B1 | 6 | 24 |
AU1443, AU1472 | P8 | B1 | 6 | 25 |
AU0067 | P8 | B1 | 6 | 26 |
AU0916 | s | B1 | 6 | 31 |
HI2227 | s | B2 | 6 | 146 |
AU2676, AU0659, AU0660, PC184, AU0915, AU0918, AU2589, AU0089, AU2632, AU0897, AU1526, AU0065, AU0339 | P10 | B8 | 46 | 46 |
AU2697, AU2689, AU2730, AU0603 | P10 | B8 | 46 | 50 |
AU0551 | P10 | B8 | 46 | 51 |
AU2651, AU2725 | P7 | B6 | 71 | 72 |
AU0787 | s | s | — | 75 |
HI2766 | s | B4 | — | 76 |
HI2770 | s | s | 77 | 77 |
HI2761 | s | B4 | 77 | 78 |
HI2617 | s | s | — | 79 |
HI2490 | s | s | — | 80 |
AU0079 | s | s | 88 | 66 |
AU2622 | s | s | 88 | 88 |
AU0137, AU0583, AU0566 | P1 | B5 | 88 | 88 |
AU0202, PC8, HI2424, | P1 | B5 | 88 | 89 |
HI2699, HI2566, HI2429 | P2 | B5 | 88 | 89 |
AU2431, HI2426 | P4 | B5 | 88 | 89 |
HI2565 | s | B5 | 88 | 89 |
AU1217 | P1 | s | 88 | 89 |
AU1107 | P1 | B5 | 88 | 90 |
AU1482 | P1 | B5 | 88 | 91 |
HI2571, HI2628, HI2670, HI2677, HI2679 | P2 | B5 | 88 | 99 |
AU1547 | P3 | B5 | 88 | 109 |
AU2079 | P3 | B5 | 88 | 112 |
AU2027 | P3 | B5 | 88 | 114 |
HI2692 | P4 | B5 | 88 | 118 |
HI2576, HI2632 | P4 | B5 | 88 | 119 |
HI2555, HI2558, HI2431, HI2577, HI2689, HI2697, HI2691, HI2683 | P4 | B5 | 88 | 120 |
HI2485 | s | s | — | 129 |
AU0208 | s | s | — | 130 |
AU0670 | P9 | B7 | 132 | 132 |
AU1644 | P9 | B7 | 132 | 133 |
ES1405 | s | s | — | 137 |
ES0263 | s | s | 138 | 138 |
ES0222 | s | s | 141 | 141 |
AU0475 | s | s | — | 147 |
Shown are clusters delineated among the profiles with PFGE with a cutoff value of 65% similarity or among the profiles obtained with BOX-PCR with a cutoff value of 70% similarity. MLRT data were taken from previous studies (10; T. Coenye and J. J. LiPuma, submitted for publication). CC, clonal complex; s, separate position in the dendrogram; —, does not belong to a clonal complex (singleton type).