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. 2005 Nov 4;6:152. doi: 10.1186/1471-2164-6-152

Table 1.

List of human MHC class I and extended class I (xI) region genes used against the zebrafish whole-genome assembly. Genes with the suffix "like" are either gene fragments and/or highly similar to their human counterparts. Genes not identified by sequence similarity searches are marked as not found (NF). The official gene nomenclature for zebrafish is shown in brackets.

MHC CLASS I REGION GENES
HUMAN ZEBRAFISH


name accession location location location location
xI HFE NM_000410 NF
xI HMGN4 NM_006353 NF
xI PRSS16 NM_005865 NF
xI POM121L2 NM_033482 NF
xI GPX5 NM_001509 NF
xI RFP NM_006510 NF
xI MAS1L NM_052967 NF
xI UBD NM_006398 NF
xI GABBR1 NM_021905 15 [gabbr1] 19 [gabbr1]
xI MOG NM_002433 NF
I HLA* 19 [mhc1uea] 19 [mhc1uaa] 19 [mhc1ufa] 19 [mhc1uda]
s_1723 [mhc1ze] 1 [mhc1-like] (X3) 1 [zgc:64115]
I HCG9 NM_005844 NF
I PPP1R11 NM_021959 NF
I RPP21 NM_024839 NF
I GNL1 NM_005275 16 [gnl1]
I PRR3 NM_025263 NF
I ABCF1 NM_001090 19 [zgc:85667]
I PPP1R10 NM_002714 19 [ppp1r10]
I MRPS18B NM_014046 19 [mrps18b]
I C6orf134 NM_024909 19 [c6orf134]
I C6orf136 NM_145029 19 [c6orf136]
I DHX16 NM_003587 NA5816 [dhx16] 15 [dhx16]
I NRM NM_007243 NA1826 [nrm]
I MDC1 NM_014641 NF
I TUBB NM_178014 20 [tubb5] 14 [tubb2] 23 [tubb2]
I FLOT1 NM_005803 19 [flot1] 16 [flot1b]
I IER3 NM_003897 NF 22 [ier5]
I DDR1 NM_013994 16 [ddr1-like] 4 [ddr2]
I GTF2H4 NM_001517 19 [zgc:77721]
I VARS2L NM_020442 19 [vars2-like]
I DPCR1 NM_080870 NF
I C6orf15 NM_014070 NF
I CDSN NM_001264 NF
I PSORS1C1 NM_014068 NF
I PSORS1C2 NM_014069 NF
I C6orf18 NM_019052 NF
I TCF19 NM_007109 1 [tcf19-like]
I POU5FI NM_002701 16 [pou5f1]
I MICA NM_000247 NF
I HCP5 NM_006674 NF
I MICB NM_005931 NF
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