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. 2026 Mar 14;20:75. doi: 10.1186/s40246-026-00948-5

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© The Author(s) 2026

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — Molecular dynamics simulation trajectory analysis for the BPAF-RXRA complex. A RMSD plot. B RMSF plot. C Rg plot. D Number of hydrogen bonds plot. E SASA plot. F Decomposition of the total binding free energy into individual component contributions calculated by MM-GB/PBSA. G Two-dimensional (2D) and three-dimensional (3D) Gibbs free energy landscapes of the BPAF-RXRA complex, along with the dominant conformation diagram for the complex