. 2005 Dec;139(4):1853–1869. doi: 10.1104/pp.105.067314

Table II.

Identification of embryo sac genes

Genes were selected on the basis of the P value of <0.0050, fold change of >2.0, and signal intensity of >60.0 at wild-type siblings. WT^1–3, Mean of signal intensities for arrays 1 to 3 of wild-type siblings. spl^1–3, Mean of signal intensities for arrays 1 to 3 of spl mutants. WT^d1–d3, Mean of signal intensities for arrays 1 to 3 of emasculated wild-type siblings. spl^{1–3, d1–d2}, Mean of signal intensities for arrays 1 to 3 of nonemasculated spl, and arrays 1 and 2 of emasculated spl.

Affymetrix Code^a	Gene ID^b	Description	Early Staged Ovule				Late Staged Ovule				Division^e
Affymetrix Code^a	Gene ID^b	Description	WT^1–3	spl^1–3	FC^c	P Value^d	WT^d1–d3	spl^{1–3, d1–d2}	FC^c	P Value^d	Division^e
Unknown protein
261271_at	At1g26795	Self-incompatibility protein related	769	30	25.3	0.000083	761	27	28.2	0.000000	Both
265133_s_at	At1g51250	Expressed protein	151	25	6.1	0.001456	539	19	28.2	0.000000	Both
259726_at	At1g60985	Expressed protein	98	16	5.9	0.002140	349	16	21.4	0.000003	Both
265762_at	At2g01240	Reticulon family protein (RTNLB15)	227	15	15.1	0.000418	148	14	10.3	0.000020	Both
263713_at	At2g20595	Expressed protein	278	15	18.9	0.003556	1,047	25	41.4	0.000000	Both
267193_at	At2g30900	Expressed protein	97	23	4.3	0.000554	108	20	5.4	0.000016	Both
256719_at	At2g34130	CACTA-like transposase family (Ptta/En/Spm)	117	11	10.3	0.000181	114	10	11.8	0.000000	Both
256600_at	At3g14850	Expressed protein	261	34	7.6	0.000088	294	35	8.5	0.000000	Both
257889_at	At3g17080	Self-incompatibility protein related	187	30	6.2	0.002931	342	19	17.8	0.000000	Both
251698_at	At3g56610	Expressed protein	518	16	32.0	0.004682	1,444	31	46.8	0.000000	Both
254257_s_at	At4g23350	Expressed protein	104	30	3.5	0.003879	335	22	15.3	0.000000	Both
253164_at	At4g35725	Expressed protein	158	15	10.4	0.003044	298	14	21.2	0.000024	Both
250871_at	At5g03930	Expressed protein	171	24	7.0	0.001971	106	14	7.5	0.000002	Both
250325_s_at	At5g12060	Self-incompatibility protein related	138	41	3.4	0.001255	206	30	6.8	0.000001	Both
249855_at	At5g22970	Expressed protein	261	25	10.6	0.003517	1,028	32	31.7	0.000001	Both
249757_at	At5g24316	Pro-rich family protein	471	17	27.7	0.001766	1,328	29	45.6	0.000000	Both
249401_at	At5g40260	Nodulin MtN3 family protein	566	37	15.2	0.000603	427	30	14.3	0.000004	Both
248284_at	At5g52975	Expressed protein	755	81	9.3	0.000353	403	49	8.2	0.000001	Both
262503_at	At1g21670	Expressed protein	161	41	4.0	0.000009	64	45	1.4	0.031616	Early
261731_s_at	At1g47780	Acyl-protein thioesterase related	84	15	5.6	0.004140	60	13	4.7	0.000003	Early
249375_at	At5g40730	Arabinogalactan protein (AGP24)	806	129	6.2	0.000342	661	575	1.1	0.245297	Early
264610_at	At1g04645	Self-incompatibility protein related	106	18	5.7	0.157950	793	21	38.1	0.000557	Late
261846_at	At1g11540	Expressed protein	145	107	1.4	0.117890	170	85	2.0	0.000012	Late
255908_s_at	At1g18010	Expressed protein	128	64	2.0	0.018058	93	45	2.1	0.000005	Late
256079_at	At1g20680	Expressed protein	56	14	3.9	0.011798	67	12	5.7	0.000019	Late
263027_at	At1g24010	Expressed protein	23	12	1.9	0.256580	96	22	4.3	0.000001	Late
260942_s_at	At1g45190	Expressed protein	318	6	49.3	0.007497	1,404	30	47.1	0.000000	Late
265138_at	At1g51300	Acyl-protein thioesterase related	192	43	4.4	0.015275	450	49	9.1	0.000000	Late
262314_at	At1g70810	C2 domain-containing protein	23	17	1.4	0.182775	65	17	3.8	0.000004	Late
262972_at	At1g75620	Glyoxal oxidase related	67	49	1.4	0.205253	133	38	3.5	0.000079	Late
264297_at	At1g78710	Expressed protein	120	62	1.9	0.005001	144	57	2.5	0.000001	Late
267241_at	At2g02490	Hydroxyproline-rich glycoprotein family protein	45	4	10.6	0.052466	395	11	37.0	0.000186	Late
267218_at	At2g02515	Expressed protein	163	39	4.2	0.007206	838	34	24.8	0.000001	Late
265517_at	At2g06090	Self-incompatibility protein related	254	14	17.8	0.013973	1,109	23	47.4	0.000000	Late
264590_at	At2g17710	Expressed protein	144	194	0.7	0.361347	841	394	2.1	0.000010	Late
263518_at	At2g21655	Expressed protein	271	17	15.8	0.015412	946	25	37.6	0.000001	Late
265674_at	At2g32190	Expressed protein	100	61	1.6	0.072973	198	70	2.8	0.000267	Late
265670_s_at	At2g32210	Expressed protein	155	158	1.0	0.888298	213	76	2.8	0.000186	Late
265245_at	At2g43060	Expressed protein	39	45	0.9	0.564913	131	62	2.1	0.000340	Late
259107_at	At3g05460	Sporozoite surface protein related	403	43	9.4	0.008348	1,415	46	31.1	0.000069	Late
258130_at	At3g24510	Expressed protein	486	10	48.6	0.012987	2,033	38	53.8	0.000000	Late
252253_at	At3g49300	Pro-rich family protein	251	42	6.0	0.007754	626	32	19.3	0.000044	Late
251606_at	At3g57840	Self-incompatibility protein related	109	39	2.8	0.058391	468	38	12.4	0.000005	Late
255207_at	At4g07515	Expressed protein	453	23	19.8	0.008275	859	32	27.0	0.000000	Late
245424_at	At4g17505	Expressed protein	157	55	2.8	0.005099	312	33	9.4	0.000003	Late
254494_at	At4g20050	Expressed protein	125	85	1.5	0.069310	230	59	3.9	0.000001	Late
254001_at	At4g26260	Expressed protein	174	62	2.8	0.067591	149	25	5.9	0.000073	Late
253724_at	At4g29285	Expressed protein	91	12	7.3	0.029036	647	16	39.5	0.000000	Late
253656_at	At4g30090	Expressed protein	101	85	1.2	0.276358	76	37	2.1	0.000137	Late
253401_at	At4g32870	Expressed protein	88	41	2.1	0.040870	165	39	4.3	0.000012	Late
246641_s_at	At5g34885	Expressed protein	216	21	10.3	0.025229	631	27	23.5	0.000000	Late
249179_at	At5g42955	Expressed protein	266	14	19.3	0.014861	882	23	38.0	0.000000	Late
248892_at	At5g46300	Expressed protein	62	5	11.8	0.014887	124	5	23.1	0.000001	Late
Central intermediary metabolism
259786_at	At1g29660	GDSL-motif lipase/hydrolase family protein	289	84	3.4	0.003166	879	425	2.1	0.000131	Both
260124_at	At1g36340	Ubiquitin-conjugating enzyme, E2	584	38	15.3	0.001661	467	34	13.8	0.000002	Both
245672_at	At1g56710	Glycoside hydrolase family 28 protein	218	85	2.6	0.004220	235	94	2.5	0.000298	Both
257442_at	At2g28680	Cupin family protein	316	47	6.8	0.001424	303	33	9.2	0.000008	Both
267408_at	At2g34890	CTP synthase, putative	152	25	6.1	0.000651	67	16	4.2	0.000011	Both
257243_at	At3g24230	Pectate lyase family protein	332	59	5.7	0.003792	198	63	3.2	0.000001	Both
258763_s_at	At3g30540	(1-4)-β-Mannan endohydrolase family	125	8	15.9	0.002254	148	9	17.4	0.000000	Both
252342_at	At3g48950	Glycoside hydrolase family 28 protein	348	30	11.6	0.001576	603	26	23.3	0.000000	Both
248925_at	At5g45910	GDSL-motif lipase/hydrolase-like protein	279	14	20.0	0.001613	1,367	26	53.5	0.000000	Both
247228_at	At5g65140	Trehalose-6-phosphate phosphatase	305	38	8.0	0.000647	246	92	2.7	0.000044	Both
264147_at	At1g02200	CER1 protein	206	85	2.4	0.000205	40	39	1.0	0.799875	Early
264146_at	At1g02205	CER1 protein, At1g02200	650	279	2.3	0.000021	219	225	1.0	0.820363	Early
259703_at	At1g77790	Glycosyl hydrolase family 17 protein	113	16	7.0	0.000428	54	11	4.8	0.000000	Early
267202_s_at	At2g31030	Oxysterol-binding family protein	74	10	7.3	0.000864	27	7	3.8	0.000005	Early
260611_at	At2g43670	Glycosyl hydrolase family 17 protein	132	53	2.5	0.002326	129	75	1.7	0.000212	Early
252320_at	At3g48580	Xyloglucan:xyloglucosyl transferase, putative	743	315	2.4	0.003795	1,176	766	1.5	0.004917	Early
250082_at	At5g17200	Glycoside hydrolase family 28 protein	71	17	4.2	0.002910	20	11	1.8	0.000578	Early
260947_at	At1g06020	PfkB-type carbohydrate kinase family protein	58	40	1.5	0.010463	75	29	2.6	0.000134	Late
259391_s_at	At1g06350	Fatty acid desaturase family protein	163	98	1.7	0.342723	196	88	2.2	0.000376	Late
255956_at	At1g22015	Galactosyltransferase family protein	158	43	3.7	0.007113	274	34	8.0	0.000000	Late
245792_at	At1g32100	Pinoresinol-lariciresinol reductase, putative	66	66	1.0	0.993453	184	68	2.7	0.000127	Late
245794_at	At1g32170	Xyloglucan:xyloglucosyl transferase, putative	59	49	1.2	0.363717	101	47	2.1	0.000150	Late
256211_at	At1g50960	Gibberellin 20-oxidase related	42	19	2.2	0.015340	75	14	5.4	0.000000	Late
260333_at	At1g70500	Polygalacturonase, putative/pectinase, putative	581	27	21.7	0.007959	674	42	16.0	0.000001	Late
260066_at	At1g73610	GDSL-motif lipase/hydrolase family protein	69	24	2.9	0.035163	163	20	8.0	0.000056	Late
260259_at	At1g74300	Esterase/lipase/thioesterase family protein	60	57	1.1	0.690243	105	47	2.2	0.000095	Late
265331_at	At2g18420	Gibberellin-responsive protein, putative	27	25	1.1	0.777953	73	18	4.1	0.000139	Late
267607_s_at	At2g26740	Epoxide hydrolase, soluble (sEH)	138	137	1.0	0.977676	205	87	2.4	0.000242	Late
267337_at	At2g39980	Transferase family protein	93	46	2.0	0.015251	69	30	2.3	0.000006	Late
260559_at	At2g43860	Polygalacturonase, putative/pectinase, putative	113	38	3.0	0.005920	69	30	2.3	0.000032	Late
258767_at	At3g10890	(1-4)-β-Mannan endohydrolase, putative	100	16	6.3	0.013753	698	20	35.1	0.000002	Late
258151_at	At3g18080	Glycosyl hydrolase family 1 protein	199	194	1.0	0.899935	384	124	3.1	0.000003	Late
257065_at	At3g18220	Phosphatidic acid phosphatase family protein	45	29	1.5	0.034020	63	22	2.8	0.000003	Late
251491_at	At3g59480	PfkB-type carbohydrate kinase family protein	549	56	9.9	0.032782	598	210	2.8	0.001882	Late
255550_at	At4g01970	Galactinol-raffinose galactosyltransferase, putative	127	41	3.1	0.006794	226	83	2.7	0.000170	Late
245349_at	At4g16690	Esterase/lipase/thioesterase family protein	75	40	1.9	0.193063	112	53	2.1	0.000368	Late
254609_at	At4g18970	GDSL-motif lipase/hydrolase family protein	461	508	0.9	0.189942	703	309	2.3	0.000085	Late
246498_at	At5g16230	Acyl-[acyl-carrier-protein] desaturase, putative	34	26	1.3	0.219929	84	23	3.6	0.001229	Late
249983_at	At5g18470	Curculin-like (mannose-binding) lectin family protein	44	35	1.2	0.486888	106	48	2.2	0.001507	Late
246774_at	At5g27530	Glycoside hydrolase family 28 protein	108	46	2.4	0.012277	146	31	4.8	0.000001	Late
249474_s_at	At5g39190	Germin-like protein (GER2)	14	12	1.2	0.500732	99	13	7.6	0.000004	Late
248812_at	At5g47330	Palmitoyl protein thioesterase family protein	63	78	0.8	0.143704	203	43	4.7	0.000004	Late
248791_at	At5g47350	Palmitoyl protein thioesterase family protein	212	65	3.3	0.040644	1,167	291	4.0	0.000003	Late
Hypothetical protein
260318_at	At1g63960	Hypothetical protein	62	20	3.2	0.002924	72	20	3.5	0.000014	Both
265579_at	At2g20070	Hypothetical protein	661	48	13.8	0.000041	487	36	13.4	0.000000	Both
257434_at	At2g21740	Hypothetical protein	128	25	5.0	0.001238	301	20	15.3	0.000000	Both
252753_at	At3g43500	Hypothetical protein	80	20	4.0	0.002002	131	20	6.6	0.000002	Both
246859_at	At5g25950	Hypothetical protein	70	13	5.4	0.000045	131	12	10.9	0.000000	Both
248225_at	At5g53740	Hypothetical protein	168	72	2.3	0.000851	111	52	2.1	0.000065	Both
266706_at	At2g03320	Hypothetical protein	97	28	3.5	0.001116	47	17	2.8	0.000175	Early
246866_at	At5g25960	Hypothetical protein	131	11	11.7	0.000000	41	9	4.8	0.000020	Early
248396_at	At5g52130	Hypothetical protein	111	21	5.4	0.000609	47	15	3.2	0.000216	Early
257468_at	At1g47470	Hypothetical protein	147	13	11.2	0.029273	1,010	25	40.1	0.000000	Late
261313_at	At1g52970	Hypothetical protein	484	49	9.9	0.007905	1,881	59	32.1	0.000000	Late
259944_at	At1g71470	Hypothetical protein	72	60	1.2	0.213121	71	33	2.1	0.000104	Late
263895_at	At2g21920	Hypothetical protein	107	26	4.2	0.007542	73	17	4.2	0.000906	Late
258798_at	At3g04540	Hypothetical protein	202	55	3.7	0.087047	1,542	50	30.9	0.000000	Late
256773_at	At3g13630	Hypothetical protein	31	28	1.1	0.715677	60	27	2.2	0.000839	Late
251607_at	At3g57850	Hypothetical protein	73	11	6.6	0.036056	370	13	29.4	0.000050	Late
255029_x_at	At4g09470	Hypothetical protein	139	8	17.2	0.012714	687	16	43.5	0.000003	Late
255804_at	At4g10220	Hypothetical protein	120	31	3.9	0.009652	410	34	12.0	0.000003	Late
254692_at	At4g17860	Hypothetical protein	60	35	1.7	0.028983	107	28	3.9	0.000008	Late
246472_at	At5g17130	Hypothetical protein	80	83	1.0	0.853233	75	34	2.2	0.000487	Late
249157_at	At5g43510	Hypothetical protein	356	13	27.3	0.012178	588	29	20.1	0.000001	Late
247245_at	At5g64720	Hypothetical protein	105	15	6.9	0.010392	322	13	24.5	0.000000	Late
Detoxification/stress response
264001_at	At2g22420	Peroxidase 17 (PER17)	791	121	6.5	0.003718	725	120	6.1	0.000007	Both
265264_at	At2g42930	Glycosyl hydrolase family protein 17	346	55	6.3	0.003492	285	34	8.5	0.000007	Both
254000_at	At4g26250	Galactinol synthase induced by water stress	89	18	4.8	0.003892	65	15	4.2	0.000004	Both
252951_at	At4g38700	Disease resistance-responsive family protein	248	109	2.3	0.004228	706	115	6.2	0.000000	Both
247857_at	At5g58400	Peroxidase, putative	1,053	240	4.4	0.000004	473	161	2.9	0.000023	Both
261410_at	At1g07610	Metallothionein-like protein 1C (MT-1C)	333	159	2.1	0.000832	238	170	1.4	0.168590	Early
266743_at	At2g02990	Ribonuclease 1 (RNS1)	67	23	2.9	0.001354	140	100	1.4	0.201557	Early
263026_at	At1g24000	Bet v I allergen family protein	43	15	2.9	0.266278	250	19	12.9	0.000001	Late
265920_s_at	At2g15120	Pseudogene, disease-resistance family protein	38	33	1.1	0.299880	103	23	4.6	0.000933	Late
266562_at	At2g23970	Defense-related protein, putative	68	60	1.1	0.479766	194	38	5.1	0.000000	Late
267138_s_at	At2g38210	Ethylene-responsive protein, putative	181	86	2.1	0.091609	246	76	3.2	0.001233	Late
266169_at	At2g38900	Ser protease inhibitor	40	37	1.1	0.867313	343	105	3.3	0.000002	Late
260557_at	At2g43610	Glycoside hydrolase family 19 protein	94	49	1.9	0.003261	76	33	2.3	0.000002	Late
258791_at	At3g04720	Hevein-like protein (HEL)	35	35	1.0	0.937369	91	34	2.6	0.003414	Late
258172_at	At3g21620	Early responsive to dehydration protein related	60	24	2.5	0.000597	68	21	3.2	0.000002	Late
254098_at	At4g25100	Superoxide dismutase (Fe), chloroplast (SODB)	688	313	2.2	0.060518	76	14	5.6	0.000220	Late
253655_at	At4g30070	Plant defensin-fusion protein, putative	99	39	2.5	0.007716	167	23	7.4	0.000001	Late
250200_at	At5g14130	Peroxidase, putative	94	67	1.4	0.229669	106	41	2.6	0.000012	Late
250083_at	At5g17220	Glutathione S-transferase-like protein	99	93	1.1	0.870900	537	235	2.3	0.000020	Late
249560_at	At5g38330	Plant defensin-fusion protein, putative	280	26	11.0	0.008435	1,140	29	39.5	0.000000	Late
249527_at	At5g38710	Pro oxidase, putative	70	18	3.9	0.006176	74	15	4.8	0.000019	Late
Cell structure organization
260573_at	At2g47280	Pectinesterase family protein	227	36	6.4	0.000454	139	25	5.5	0.000000	Both
257878_at	At3g17150	Invertase/pectin methylesterase inhibitor family	399	26	15.3	0.004375	1,121	38	29.2	0.000000	Both
258438_at	At3g17230	Invertase/pectin methylesterase inhibitor family	434	30	14.4	0.000924	758	30	24.8	0.000000	Both
251748_at	At3g55680	Invertase/pectin methylesterase inhibitor family	162	51	3.2	0.000901	112	39	2.8	0.000002	Both
255699_at	At4g00190	Putative pectinesterase	86	31	2.8	0.001537	90	24	3.7	0.000001	Both
248823_s_at	At5g46960	Invertase/pectin methylesterase inhibitor family	270	8	35.1	0.002890	519	13	39.4	0.000003	Both
247246_at	At5g64620	Invertase/pectin methylesterase inhibitor family	747	338	2.2	0.000298	870	425	2.0	0.000000	Both
260802_at	At1g78400	Glycoside hydrolase family 28 protein	201	23	8.8	0.000001	30	18	1.7	0.001391	Early
258764_at	At3g10720	Pectinesterase, putative	415	205	2.0	0.001974	112	77	1.5	0.008263	Early
253725_at	At4g29340	Profilin 3 (PRO3) (PFN3)	63	27	2.3	0.000446	26	23	1.1	0.244366	Early
264500_at	At1g09370	Pectinesterase inhibitor domain-containing protein	61	10	6.0	0.123949	594	14	43.8	0.000012	Late
259613_at	At1g48010	Invertase/pectin methylesterase inhibitor family	38	36	1.1	0.597625	105	29	3.6	0.000000	Late
262083_at	At1g56100	Pectinesterase inhibitor domain-containing protein	128	53	2.4	0.444629	2,622	746	3.5	0.000012	Late
245656_at	At1g56620	Pectinesterase inhibitor domain-containing protein	50	26	1.9	0.044275	252	19	13.3	0.000000	Late
257679_at	At3g20470	Pseudogene, Gly-rich protein	117	99	1.2	0.700308	578	267	2.2	0.001050	Late
245371_at	At4g15750	Invertase/pectin methylesterase inhibitor family	200	63	3.2	0.067454	1,378	440	3.1	0.000004	Late
249962_at	At5g18990	Pectinesterase family protein	39	19	2.0	0.028245	82	15	5.5	0.000041	Late
247377_at	At5g63180	Pectate lyase family protein	175	125	1.4	0.147262	410	192	2.1	0.000518	Late
Transport
260319_at	At1g63950	Heavy-metal-associated domain-containing protein	310	28	10.9	0.002905	148	19	7.9	0.000001	Both
259757_at	At1g77510	Protein disulfide isomerase, putative	1,163	447	2.6	0.000344	943	367	2.6	0.000170	Both
258760_at	At3g10780	Emp24/gp25L/p24 family protein	435	94	4.6	0.001770	400	75	5.4	0.000000	Both
245892_at	At5g09370	Protease inhibitor/seed storage/lipid transfer protein	384	57	6.8	0.004630	1,326	108	12.3	0.000002	Both
263765_at	At2g21540	SEC14 cytosolic factor, putative	135	64	2.1	0.000985	64	42	1.5	0.002042	Early
249346_at	At5g40780	Lys- and His-specific transporter, putative	783	170	4.6	0.002599	877	624	1.4	0.054790	Early
264520_at	At1g10010	Amino acid permease, putative	91	35	2.6	0.005939	167	34	4.8	0.000000	Late
265002_at	At1g24400	Lys- and His-specific transporter	156	41	3.8	0.024933	311	142	2.2	0.000005	Late
259580_at	At1g28030	Oxidoreductase, 2OG-Fe(II) oxygenase family protein	52	44	1.2	0.276557	95	32	3.0	0.000024	Late
265064_at	At1g61630	Equilibrative nucleoside transporter, putative (ENT7)	70	40	1.7	0.013220	67	29	2.3	0.000179	Late
259844_at	At1g73560	Protease inhibitor/seed storage/lipid transfer protein	49	22	2.2	0.005234	91	19	4.9	0.000122	Late
264482_at	At1g77210	Sugar transporter, putative	73	65	1.1	0.601658	118	55	2.1	0.000012	Late
257366_s_at	At2g03040	Transmembrane protein related	159	39	4.1	0.005632	184	22	8.3	0.000008	Late
266276_at	At2g29330	Tropinone reductase, putative	68	30	2.3	0.007410	68	28	2.4	0.000243	Late
254453_at	At4g21120	Amino acid permease family protein	211	64	3.3	0.007991	259	88	2.9	0.000000	Late
246887_at	At5g26250	Sugar transporter, putative	159	61	2.6	0.015475	146	37	4.0	0.000013	Late
248275_at	At5g53520	Oligopeptide transporter OPT family protein	43	32	1.3	0.204722	80	20	3.9	0.000002	Late
248019_at	At5g56480	Protease inhibitor/seed storage/lipid transfer protein	61	50	1.2	0.206709	111	38	2.9	0.000015	Late
Protein degradation
256486_at	At1g31450	Aspartyl protease family protein	263	18	14.8	0.001311	607	17	35.1	0.000000	Both
245738_at	At1g44130	Nucellin protein, putative	117	10	12.3	0.002988	94	8	11.2	0.000067	Both
259368_at	At1g69100	Aspartyl protease family protein	546	13	42.6	0.003756	952	33	29.1	0.000000	Both
252499_s_at	At3g46840	Subtilase family protein	389	34	11.6	0.000398	443	26	17.2	0.000001	Both
245589_at	At4g15040	Subtilase family protein	171	23	7.3	0.000154	66	17	4.0	0.000055	Both
254336_at	At4g22050	Aspartyl protease family protein	681	37	18.3	0.000096	714	67	10.6	0.000000	Both
246684_at	At5g33340	Aspartyl protease family protein	98	25	4.0	0.000228	189	21	9.1	0.000001	Both
247798_at	At5g58830	Subtilase family protein	73	15	5.0	0.002673	235	13	17.7	0.000000	Both
254237_at	At4g23520	Cys proteinase, putative	67	28	2.4	0.000243	41	22	1.9	0.000254	Early
247697_at	At5g59810	Subtilase family protein	92	43	2.1	0.002288	56	44	1.3	0.003872	Early
264067_x_at	At2g28010	Aspartyl protease family protein	33	19	1.7	0.039844	78	13	5.9	0.000004	Late
250345_at	At5g11940	Subtilase family protein	58	15	3.9	0.005591	154	14	11.4	0.000000	Late
Signal transduction
263740_at	At2g20660	Rapid alkalinization factor (RALF) family protein	82	33	2.4	0.000758	90	24	3.8	0.000000	Both
245158_at	At2g33130	RALF family protein	435	34	12.8	0.000989	437	38	11.4	0.000000	Both
266418_at	At2g38750	Annexin 4 (ANN4)	274	62	4.4	0.003825	220	67	3.3	0.000001	Both
251514_at	At3g59260	Pirin, putative	202	33	6.1	0.001924	171	30	5.7	0.000002	Both
255489_at	At4g02650	Epsin N-terminal homology domain-containing protein	448	22	20.7	0.004357	1,286	32	39.8	0.000000	Both
245177_at	At5g12380	Annexin, putative	190	17	11.2	0.000393	215	17	12.8	0.000000	Both
249013_at	At5g44700	Leu-rich repeat transmembrane protein kinase	81	31	2.6	0.001303	75	30	2.5	0.000305	Both
261285_at	At1g35720	Annexin 1 (ANN1)	168	122	1.4	0.273697	393	108	3.6	0.000012	Late
257869_at	At3g25160	ER lumen protein retaining receptor family protein	86	51	1.7	0.030431	147	52	2.8	0.000020	Late
250090_at	At5g17330	Glutamate decarboxylase 1 (GAD 1)	195	21	9.2	0.005864	222	25	9.0	0.000000	Late
Energy metabolism
259268_at	At3g01070	Plastocyanin-like domain-containing protein	79	28	2.8	0.002166	126	26	4.8	0.000001	Both
253634_at	At4g30590	Plastocyanin-like domain-containing protein	705	56	12.6	0.000057	500	41	12.3	0.000005	Both
252897_at	At4g39490	Cytochrome P450 family protein, At4g38480	62	19	3.4	0.004614	134	18	7.5	0.000000	Both
248236_at	At5g53870	Plastocyanin-like domain-containing protein	1,236	60	20.7	0.000394	653	165	4.0	0.000009	Both
262528_at	At1g17260	ATPase 10, plasma membrane type, putative	45	26	1.7	0.385722	344	102	3.4	0.000002	Late
261396_at	At1g79800	Plastocyanin-like domain-containing protein	49	40	1.2	0.236124	69	31	2.2	0.000064	Late
266563_at	At2g23990	Plastocyanin-like domain-containing protein	195	47	4.2	0.011017	953	41	23.3	0.000015	Late
255690_at	At4g00360	Cytochrome P450, putative	49	23	2.1	0.018309	79	29	2.7	0.000026	Late
254489_at	At4g20800	FAD-binding domain-containing protein	47	11	4.4	0.027803	121	11	11.3	0.000000	Late
Transcriptional regulation
267528_at	At2g45650	MADS-box protein (AGL6)	245	59	4.2	0.002904	359	170	2.1	0.000048	Both
249338_at	At5g41090	No apical meristem (NAM) family protein	166	18	9.1	0.000764	77	13	5.8	0.000000	Both
260212_at	At1g74480	RWP-RK domain-containing protein	55	36	1.5	0.071151	65	29	2.2	0.001510	Late
266969_at	At2g39540	Gibberellin-regulated family protein	41	38	1.1	0.593532	179	32	5.6	0.000003	Late
254619_at	At4g18770	Myb family transcription factor (MYB98)	109	59	1.8	0.063530	110	41	2.7	0.000002	Late
251114_at	At5g01380	Expressed protein	25	26	1.0	0.855505	62	23	2.7	0.000211	Late
248240_at	At5g53950	No apical meristem (NAM) family protein	224	201	1.1	0.399544	269	110	2.4	0.000013	Late
Secondary metabolism
260386_at	At1g74010	Strictosidine synthase family protein	110	21	5.1	0.001313	368	22	16.4	0.000010	Both
264401_at	At1g61720	Dihydroflavonol 4-reductase family (BAN)	54	45	1.2	0.693582	535	176	3.0	0.000017	Late
260335_at	At1g74000	Strictosidine synthase family protein	144	72	2.0	0.005947	104	39	2.7	0.000038	Late
254283_s_at	At4g22870	Leucoanthocyanidin dioxygenase, putative	81	85	1.0	0.880918	416	183	2.3	0.000118	Late
249215_at	At5g42800	Dihydroflavonol 4-reductase	31	26	1.2	0.546725	301	84	3.6	0.000030	Late
Plant development/organogenesis
262113_at	At1g02820	Late embryogenesis abundant 3 family protein	82	33	2.5	0.000057	76	27	2.8	0.000001	Both
262659_at	At1g14240	Nucleoside phosphatase family protein	80	25	3.3	0.000911	92	16	5.8	0.000000	Both
262549_at	At1g31290	PAZ domain-containing protein	140	99	1.4	0.096043	169	63	2.7	0.000011	Late
252234_at	At3g49780	Phytosulfokines 3 (PSK3)	17	9	2.0	0.386279	163	43	3.8	0.000014	Late
251301_at	At3g61880	Cytochrome P450, putative	94	51	1.9	0.003809	91	41	2.2	0.000032	Late
Protein biosynthesis/DNA catabolism
245883_at	At5g09500	40S ribosomal protein S15 (RPS15C)	85	18	4.7	0.002080	54	9	5.9	0.000028	Early
260438_at	At1g68290	Bifunctional nuclease, putative	44	28	1.6	0.093917	149	25	5.9	0.000104	Late

Affymetrix probe set number.

Arabidopsis Genome Initiative number.

Fold change for signal intensity of wild type/signal intensity of spl.

P values calculated by Student's t test for two-sample equal variance.

Expressed ovule stage.