| bp | Base pairs |
| BIC | Bayesian Information Criterion |
| BSL3 | Biosafety level 3 |
| cDNA | Complementary DNA |
| CI | Confidence interval |
| DNA | Desoxyribonucleic acid |
| dNTPs | Deoxynucleotide triphosphates |
| DTT | Dithiothreitol |
| HEV | Hepatitis E virus |
| ML | Maximum likelihood |
| nt | Nucleotides |
| ORF | Open reading frame |
| PCR | Polymerase chain reaction |
| PBS | Phosphate-buffered saline |
| RNA | Ribonucleic acid |
| RT-qPCR | Reverse transcription quantitative polymerase chain reaction |
| SH-like aLRT | Shimodaira–Hasegawa-like approximate likelihood ratio test |
| tMRCA | Time to the most recent common ancestor |
| µL | Microliter |
| µM | Micromolar |
| w/v | Weight/volume |