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. Author manuscript; available in PMC: 2026 May 5.
Published in final edited form as: Adv Neural Inf Process Syst. 2025;38:D&B T.

Table 1:

Multi-class tissue classification performance of baseline, SOTA, pathology foundation, and custom models trained on HMU, NCT, and STARC-9 for seven common tissue types (ADI, LYM, MUS, MUC, NCS, TUM, NOR) evaluated on the STANFORD-CRC-HE-VAL-LARGE dataset. The highest accuracy models for each dataset are highlighted in bold.

Model Precision Recall F1-macro Accuracy No. of params.
NCT HMU STARC-9 NCT HMU STARC-9 NCT HMU STARC-9 NCT HMU STARC-9
Baseline models
ResNet50 [10] 84.08 87.81 98.92 62.59 85.71 98.64 63.17 86.00 98.78 62.59 85.71 98.64 24 M
EfficientNet-B7 [38] 89.99 88.65 99.11 82.47 87.45 98.80 84.55 87.87 98.95 82.47 84.45 98.80 64 M
ViT-base [8] 92.71 91.57 98.49 84.25 90.29 98.09 87.30 90.87 98.28 84.25 90.29 98.09 86 M
SOTA models
DeiT-B [41] 94.28 90.97 98.99 81.63 90.05 98.65 85.35 90.40 98.81 81.63 90.05 98.65 86 M
Swin Trans-base [21] 90.11 93.17 99.09 79.05 91.88 98.80 82.52 92.46 98.94 79.05 91.88 98.79 87 M
KimiaNet [32] 87.25 88.60 99.03 71.53 86.67 98.72 71.53 87.04 98.87 68.69 86.67 98.72 7M
ConvNeXT-base [22] 91.95 92.09 99.01 82.82 91.07 98.36 85.56 91.50 98.68 82.82 91.07 98.36 88 M
Pathology foundation models
CTransPath [44] 90.11 93.17 99.34 79.05 91.88 99.00 82.52 92.46 99.16 79.05 91.88 99.00 87 M
HiPT [6] 90.92 93.21 98.64 74.51 91.99 98.32 77.41 92.54 98.47 74.51 91.99 98.32 86 M
ProvGigPath [45] 89.43 91.47 98.74 74.18 90.60 98.37 78.40 90.92 98.55 74.18 90.60 98.37 305 M
PathDino [1] 92.93 91.19 98.67 77.35 89.64 98.37 81.71 90.22 98.51 77.35 89.64 98.37 22 M
CONCH [25] 91.53 91.41 98.56 75.69 90.02 98.19 78.08 90.52 98.37 75.69 90.02 98.19 87 M
UNI [7] 94.55 93.03 98.67 80.43 91.80 98.25 84.42 92.36 98.45 80.43 91.80 98.26 88 M
Virchow [42] 92.51 92.35 98.63 79.02 91.23 98.28 82.05 91.69 98.45 79.02 91.23 98.28 305 M
VIM4PATH [28] 91.51 92.66 98.53 75.41 91.50 98.27 79.10 92.01 98.40 75.41 91.50 98.29 86 M
Customized models (trained from scratch)
CNN 83.97 78.45 98.10 64.21 68.10 97.81 68.12 66.39 97.93 64.21 68.10 97.81 3.9 M
Histo-ViT 86.17 76.45 96.88 69.48 67.16 96.32 72.01 67.77 96.52 69.48 67.16 96.32 86 M