Table 3.
Global statistics for the R. yunnanensis genome assembly and annotation.
| Assembly | |
|---|---|
| Estimated genome size (Mb) | 612.44 |
| Total length (Mb) | 643.28 |
| Number of pseudo-chromosomes | 11 |
| Total length of pseudo-chromosomes (Mb) | 633.37 |
| Number of contigs | 144 |
| Number of scaffolds | 130 |
| Number of gaps | 14 |
| Contig N50 (Mb) | 51.92 |
| Scaffold N50 (Mb) | 54.63 |
| Longest contig (Mb) | 74.02 |
| Shortest contig (bp) | 35,038 |
| LTR assembly index | 20.50 |
| BUSCO completeness (%) | 97.46 |
| Annotation | |
| GC content (%) | 41.16 |
| Repeat content (%) | 69.89 |
| Number of protein-coding genes | 36,495 |
| Average gene length (bp) | 2,097 |
| Average coding sequence length (bp) | 1,110 |
| Average exon length (bp) | 209 |
| Average intron length (bp) | 228 |
| Functionally annotated genes | 34,365 |
| BUSCO completeness (%) | 94.93 |