Table 4.
Genomic analysis of Escherichia coli cells in the control group
| Position | Frequency (%) | Annotation | Gene | Product |
|---|---|---|---|---|
| 5,022,977 | 35.4 | L28V* (CTC→GTC) | pqiB | Intermembrane transport protein PqiB |
| 82,367 | 29.6 | A100P* (GCC→CCC) | mdoG | Glucan biosynthesis protein G |
| 5,022,975 | 29.2 | A27G* (GCG→GGG) | pqiB | Intermembrane transport protein PqiB |
| 4,935,212 | 28.6 | Intergenic (−362/+132) | lysO/aqpZ | L-lysine exporter LysO/aquaporin Z |
| 325,706 | 27.4 | S9R* (AGC→AGG) | sirB2 | Invasion regulator SirB2 |
| 1,664,261 | 27.1 | T163T* (ACC→ACG) | fryC | PTS fructose transporter subunit IIC |
| 1,244,541 | 26.2 | V392L* (GTA→CTA) | hisD | Histidinol dehydrogenase |
| 1,078,228 | 25.0 | A53P* (GCC→CCC) | D1792_RS05680 | DUF4756 family protein |
| 2,077,731 | 24.0 | Intergenic (−7/+65) | D1792_RS10070/D1792_RS10075 | Phosphoglycerate dehydrogenase/SIS domain-containing protein |
| 2,376,513 | 23.8 | G116G* (GGC→GGA) | D1792_RS11465 | YtfJ family protein |
| 2,725,980 | 22.5 | G94G* (GGC→GGG) | chiA | Bifunctional chitinase/lysozyme |
| 2,936,459 | 21.8 | L94* (TTA→TGA) ‡ | rcdB | LysR family transcriptional regulator |
| 2,555,115 | 21.5 | V98L* (GTG→CTG) | diaA | DnaA initiator-associating protein DiaA |
| 2,077,733 | 20.0 | Intergenic (−9/+63) | D1792_RS10070/D1792_RS10075 | Phosphoglycerate dehydrogenase/SIS domain-containing protein |
Note: Asterisk (*) indicates that the annotation provides functional context to the corresponding gene sequence, facilitating interpretation and analysis; Double dagger (‡) indicates a variant that is flagged as potentially problematic or requires further investigation; Underlined letters denote specific nucleotide or amino acid mutations identified within the sequence.
Abbreviations: PTS: Phosphotransferase system; PqiB: Paraquat-inducible protein B; SirB2: Signal regulatory protein beta 2; SIS: Sugar isomerase.