TABLE 6.
Up-regulated antisense transcripts
| Corresponding genes | Metal stressor | Estimated fold changea | Possible ORF | Comments |
|---|---|---|---|---|
| CC1040 and CC1041 | Chromate/dichromate | 5.3/5.7 | No | There is no gap between the probes covering the two genes, thus it is likely to be one transcript. CC1040 and CC1041 were in one operon |
| CC1127 | Uranium | 7.8 | Yes (116 aa) | |
| CC1416 | Uranium | 8.4 | Maybe | A small ORF of 52 aab may exist |
| CC2602 | Cadmium | 4.8 | Yes (135 aa) | |
| CC3553 | Chromate/dichromate | 3.1/3.7 | No | Eight consecutive probes were differentially regulated. The transcript is predicted to be 200 bp |
| CC3302 | Uranium | 27.5 | Yes (112 or 117 aa) | First three probes were not part of the transcript |
a
The fold change was estimated from the responding probes. It is marginally different from the algorithms used to obtain probe set values from all probes.
b
aa, amino acids.