TABLE 3.
Allelic profiles of 25 X. fastidiosa isolates divided into six clonal complexes linking isolates sharing at least 70% of their alleles
| Isolate (ST) | Allelic profiles
|
No. of single-locus variants per ST | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| holCa | rfbD | nuoLa | nuoN | gltTa | cysGa | petCa | pilU | leuAa | lacFa | ||
| CC1 isolates | |||||||||||
| PD1 (ST1)b | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 3 |
| PD4 (ST1)b | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
| PD6 (ST1)b | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
| PD10 (ST1)b | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | |
| PD7 (ST2) | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 | 2 |
| ALS5 (ST3) | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 5 | 1 | 1 | 2 |
| ALS11 (ST4) | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 1 | 1 |
| PD16 (ST5) | 1 | 1 | 4 | 1 | 1 | 1 | 1 | 1 | 1 | 4 | 0 |
| PD14 (ST6) | 1 | 1 | 1 | 4 | 1 | 4 | 1 | 6 | 1 | 1 | 0 |
| CC2 isolates | |||||||||||
| OLS8 (ST7)b | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 1 |
| OLS19 (ST7)b | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | |
| OLS20 (ST7)b | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | |
| OLS21 (ST7)b | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | |
| OLS2 (ST8) | 2 | 2 | 5 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 1 |
| OLS9 (ST9) | 2 | 2 | 6 | 2 | 2 | 2 | 2 | 7 | 2 | 2 | 0 |
| CC3 isolates | |||||||||||
| ALS15 (ST10)b | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 2 |
| ALS3 (ST11) | 3 | 3 | 7 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 1 |
| ALS13 (ST12) | 3 | 4 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 1 |
| CC4 isolates | |||||||||||
| OAK17 (ST13)b | 4 | 4 | 7 | 3 | 4 | 5 | 3 | 3 | 3 | 5 | 2 |
| OAK23 (ST14) | 4 | 4 | 7 | 3 | 4 | 5 | 3 | 8 | 3 | 5 | 1 |
| OAK24 (ST15) | 5 | 4 | 7 | 3 | 4 | 5 | 3 | 3 | 3 | 5 | 1 |
| CC5 isolates | |||||||||||
| PP27 (ST16) | 6 | 4 | 7 | 3 | 5 | 3 | 4 | 3 | 3 | 5 | 0 |
| PP28 (ST17) | 6 | 4 | 7 | 3 | 6 | 3 | 4 | 3 | 5 | 5 | 0 |
| CC6 isolates | |||||||||||
| ALS12 (ST18) | 7 | 4 | 7 | 3 | 7 | 6 | 3 | 1 | 6 | 5 | 0 |
| ALS22 (ST19) | 7 | 4 | 8 | 5 | 7 | 7 | 3 | 1 | 6 | 5 | 0 |
a
Locus recommended for the seven-locus MLST data set.
b
Ancestral sequence type of clonal complex.