TABLE 2.
Wild-type and mutant probe sequences
| Gene and nt position (sSNP)b | Wild-type probe
|
Mutant probe
|
||
|---|---|---|---|---|
| Sequencea | Size (bp) | Sequencea | Size (bp) | |
| oxyR-37 (G-A) | CCACCGCGGCGAACGCGCGAAGCCCTTTTTTTTTTTTTTTTTTTT | 35 | GCGGCGAACGCGCGAAACCCGTTTTTTTTTTTTTTTTTTTT | 31 |
| katG-87 (C-A) | ACCCCGTCGAGGGCGGCGGTTTTTTTTTTTTTTTTTTTT | 29 | ACCCAGTCGAGGGCGGCGGATTTTTTTTTTTTTTTTTTTT | 30 |
| rpoB-2646 (A-C) | CGGCCAGCTTGTCACCGTCGGTTTTTTTTTTTTTTTTTTTT | 31 | CGGCCAGCTTGTCCCCGTCGGTTTTTTTTTTTTTTTTTTTT | 31 |
| rpoB-3243 (A-G) | CTCCTGCAGGGTGTAGGCAGCTTTTTTTTTTTTTTTTTTTT | 31 | TCCTGCAGGGTGTAGGCGGCATTTTTTTTTTTTTTTTTTTT | 31 |
a
Polymorphic sites are boldfaced.
b
In parentheses are wild-type-to-mutant base conversions.