TABLE 1.
ORFs in P. putida KT2440 genome containing REPs
| Locus no. | PP coordinatesa | REP coordinatesa | Hitb | Reannotation suggested |
|---|---|---|---|---|
| PP1172 | 1346975-1347190 | 1347209-1347187e | NO | No gene |
| 1347116-1347138 | ||||
| 1347057-1347035 | ||||
| PP1704 | 1903494-1903619 | 1903559-1903537 | NO | No gene |
| PP1848 | 2073464-2073577 | 2073524-2073502 | NO | No gene |
| PP2850 | 3252514-3252627 | 3252617-3252639d | NO | No gene |
| PP2878 | 3279248-3279430 | 3279386-3279408 | NO | No gene |
| PP3479 | 3943877-3944410 | 3944287-3944265 | NOc | |
| PP4238 | 4811756-4812079 | 4811996-4812018 | NO | No gene |
| 4811937-4811915 | ||||
| PP5049 | 5756580-5756687 | 5756649-5756671 | NO | No gene |
| PP0101 | 106133-107650 | 107669-107647e | Sulfate transporter (putative) | |
| PP0525 | 608918-610843 | 610822-610800 | TonB-dependent receptor | 608918-610759 |
| PP1518 | 1724478-1725164 | 1724459-1724481e | Conserved hypothetical protein | |
| PP1718 | 1917139-1918278 | 1917221-1917243 | Signaling protein | |
| PP1761 | 1963390-1966311 | 1963699-1963721 | Sensory box protein | 1963855-1966311 |
| PP3753 | 4282139-4283227 | 4282149-4282127d | AraC/XylS family regulator | |
| PP4398 | 4988422-4989756 | 4988403-4988425e | Permease of major facilitator superfamily |
a
Coordinates have been determined referring to P. putida KT2440 sequenced by TIGR.
b
Result of BLAST analysis with proteins of other organisms.
c
In P. fluorescens and other related bacteria, a hypothetical protein with no conserved domain is annotated in the antiparallel strand.
d
A stop codon (TAA) is in the REP sequence.
e
A stop codon (antiparallel CTA) is in the REP sequence.