Table 2.

The CRM-target gene assignment performance of the full CRM-TI pipeline on the non-overlapping CRM-target gene pair test set and the test set with distance-unmatched negative samples

The whole CRM-TI pipeline	auROC	auPRC	F1	Precision	Recall	Specificity
On the distance-matched test set	90.0%	97.9%	0.909	0.963	0.861	0.781
On the un-sampled test set	87.3%	44.5%	0.385	0.248	0.861	0.718