T1D	Type 1 diabetes
MS	Multiple sclerosis
GWAS	Genome-Wide Association Studies
SNPs	Single Nucleotide Polymorphisms
HLA	Human Leucocyte Antigen
TYK2	Tyrosine Kinase 2
CLEC16A	C-Lectin 16A
PRF1	Perforin 1
eQTL	Expression Quantitative Trait Loci
pQTL	Protein Quantitative Traits Loci
NHGRI-EBI	National Human Genome Research Institute- European Bioinformatics Institute
IMSGC	International Multiple Sclerosis Genetics Consortium
RUNX3	RUNX family transcription factor 3
RGS2-AS1	RGS2 antisense RNA1
EOMES	Eomesodermin
ANKRD55	Ankyrin repeat domain 55
RGS14	Regulator of G protein signaling 14
PRLD1	PRELI Domain containing 1
BACH2	BACH transcriptional regulator 2
IL20RA	Interleukin 20 receptor subunit alpha
IL22RA2	Interleukin 22 receptor subunit alpha 2
IFNGR1	Interferon gamma receptor 1
WAKMAR2	Wound and keratinocyte migration-associated lncRNA 2
TNFAIP3	Tumor Necrosis Factor, Alpha-Induced Protein 3
TAGAP	T cell activation RhoGTPase-activating protein
DLL1	Delta-like canonical Notch ligand 1
FAM120B	Family with sequence similarity 120 member B
SKAP2	Src kinase-associated phosphoprotein 2
HOXA	Homeobox A1
IKZF1	ICAROS family zinc finger 1
ZNF438	Zinc finger protein 438
ZEB1	Zinc finger E-box binding homeobox 1
ZMIZ1	Zinc finger MIZ-type containing 1
PRDX5	Peroxiredoxin 5
CCDC88B	Coiled-coil and HOOK domain protein 88B
SESN3	Sestrin 3
MTMR2	Myotubularin-related protein 2
CLECL1P	C-type lectin-like 1
SH2B3	SH2B adaptor protein 3
UBAC2	UBA domain containing 2
WARS1	Tryptophanyl-tRNA synthetase 1
SLC25A47	Solute carrier family 25 member 47
RMI2	RecQ-mediated genome instability 2
LAT	Linker for activation of T cells
IRF8	Interferon regulatory factor 8
IKZF3	IKAROS family zinc finger 3
ZPBP2	Zona pellucida binding protein 2
GSDMB	Gasdermin B
PDE4A	Phosphodiesterase 4A
LD	Linkage Disequilibrium
OR	Odds Ratio
3’UTR	3’ Untranslated region
MAF	Minor Allele Frequency
CIS	Clinically Isolated Syndrome
TIGIT	T cell immunoreceptor with Ig and ITIM domains
GPR18	G protein—coupled receptor 18
IFN- γ	Interferon—gamma
RvD2	Resolvin D2
SCID	Severe Combined Immunodeficiency
TCR	T cell receptor
JAK-STAT	Janus Kinase—Signal Transducer and Activator of Transcription
Th1	Lymphocytes T helper 1
Th2	Lymphocytes T helper 2
Th17	Lymphocytes T helper 17