| IPF | Idiopathic Pulmonary Fibrosis |
| scRNA-seq | Single-Cell RNA Sequencing |
| DEGs1 | Differentially Expressed Genes 1 |
| WGCNA | Weighted Gene Co-Expression Network Analysis |
| ROC | Receiver Operating Characteristic |
| Th2 cells | T Helper 2 Cells |
| ECM | Excessive Extracellular Matrix |
| GSEA | Gene Set Enrichment Analysis |
| GEO | Gene Expression Omnibus |
| MARGs | Mitophagy-Associated Genes |
| MSigDB | Molecular Signature Database |
| HVGs | Highly Variable Genes |
| PCA | Principal Component Analysis |
| PCs | Principal Components |
| UMAP | Uniform Manifold Approximation and Projection |
| FC | Foldchange |
| DEGs2 | Differentially Expressed Genes2 |
| GO | Gene Ontology |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| MM | Module Membership |
| GS | Gene Significance |
| MARMGs | Mitophagy-Related Module Genes |
| PPI | Protein–Protein Interaction |
| STRING | Search Tool for the Retrieval of Interacting Genes |
| LASSO | Least Absolute Shrinkage and Selection Operator |
| AUC | Area Under the Curve |
| NES | Normalized Enrichment Score |
| FDR | False Discovery Rate |
| DGIdb | Drug–Gene Interaction Database |
| RT-qPCR | Reverse Transcription Quantitative Polymerase Chain Reaction |
| IL-4 | Interleukin-4 |