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. 2026 Apr 23;14(2):21. doi: 10.3390/proteomes14020021
ANOVA Analysis of variance
CCC Lin’s concordance correlation coefficient
CHO Chinese hamster ovary
CI Confidence interval
CV Coefficient of variation
DDA Data-dependent acquisition
ddaPASEF Data-dependent acquisition with parallel accumulation–serial fragmentation
DIA Data-independent acquisition
ELISA Enzyme-linked immunosorbent assay
FDP False discovery proportion
FDR False discovery rate
GMP Good manufacturing practice
HC3 Heteroscedasticity-consistent standard errors (type 3)
HCP Host cell protein
Hi3 Top-three peptide intensity summation
ICH International Council for Harmonisation
I–MR Individuals–Moving Range
KDE Kernel density estimation
LC–MS/MS Liquid chromatography–tandem mass spectrometry
LLOQ Lower limit of quantification
LoA Limits of agreement
mAb Monoclonal antibody
MW Molecular weight
ppm Parts per million (ng HCP per mg product protein)
PSM Peptide-spectrum match
REML Restricted maximum likelihood
RTC Retention time calibration
SD Standard deviation
SFSTP Société Française des Sciences et Techniques Pharmaceutiques
SIL-HCP Stable isotope-labeled host cell protein (standard)
SST System suitability test
TE Total error
TI Tolerance interval
TIMS-PASEF Trapped ion mobility spectrometry with parallel accumulation–serial fragmentation
ULOQ Upper limit of quantification
USP United States Pharmacopeia
WLS Weighted least squares