Figure 6.
Stereoview of the superposition of (A) the stems and (B) the loops of the 10 converged ψ32-ACSLPhe structures. Convergence criteria are given in the text. The views are into the major groove. Only sugar and base heavy atoms are shown and the average r.m.s. deviation for the heavy atoms between the ten structures and the average structure is 1.14 Å. The loop and stem regions are locally well defined, but the propeller twist of the A31–U39 base pair is variable among the structures and slightly increases the r.m.s.d. of the full hairpin.