Table 2.
Cas12a2 collateral cleavage kinetics.
| Substrate 10-nt Collateral Substrates |
Km (μM) | Vmax (nM sec−1) | kcat (sec−1) | kcat/Km (M−1 sec−1) |
|---|---|---|---|---|
| ssRNA | 0.09 ± 0.01 | 0.39 ± 0.01 | 0.0260 ± 0.0007 | (2.9 ± 0.3) × 105 |
| 5'-UGUAACGACC-3' | ||||
| Cas12a2 (Y465A) | 0.104 ± 0.008 | 0.422 ± 0.009 | 0.0281 ± 0.0006 | (2.7 ± 0.2) × 105 |
| Cas12a2 (Y1080A) | 0.12 ± 0.01 | 0.359 ± 0.009 | 0.0239 ± 0.0006 | (2.0 ± 0.2) × 105 |
| Cas12a2 (Y1069A) | 0.16 ± 0.01 | 0.58 ± 0.01 | 0.0387 ± 0.0007 | (2.4 ± 0.2) × 105 |
| Cas12a2 (F1092A) | 3.6 ± 3.7 | 0.5 ± 0.4 | 0.03 ± 0.03 | (1.0 ± 1.7) × 104 |
| ssDNA | 0.025 ± 0.007 | 0.185 ± 0.004 | 0.0123 ± 0.0003 | (4.9 ± 1.4) × 105 |
| 5'-TGTAACGACC-3' | ||||
| Cas12a2 (Y465A) | 0.025 ± 0.004 | 0.243 ± 0.005 | 0.0162 ± 0.0003 | (6.5 ± 1.1) × 105 |
| Cas12a2 (Y1080A) | 0.015 ± 0.003 | 0.189 ± 0.004 | 0.0126 ± 0.0003 | (8.4 ± 1.7) × 105 |
| Cas12a2 (Y1069A) | 0.030 ± 0.007 | 0.251 ± 0.009 | 0.0167 ± 0.0006 | (5.6 ± 1.3) × 105 |
| Cas12a2 (F1092A) | 0.25 ± 0.06 | 0.054 ± 0.004 | 0.0036 ± 0.0003 | (1.4 ± 0.4) × 104 |
| dsDNA | 0.042 ± 0.006 | 0.18 ± 0.005 | 0.0120 ± 0.0003 | (2.9 ± 0.4) × 105 |
| 5'-F-TGTAACGACC-Q-3' 3'- ACATTGCTGG −5' |
||||
| Cas12a2 (Y465A) | 0.10 ± 0.03 | 0.18 ± 0.01 | 0.0120± 0.0007 | (1.2 ± 0.4) × 105 |
| Cas12a2 (Y1080A) | 0.03 ± 0.01 | 0.14 ± 0.01 | 0.0093 ± 0.0007 | (3.1 ± 1.1) × 105 |
| Cas12a2 (Y1069A) | 0.10 ± 0.02 | 0.19 ± 0.01 | 0.0127 ± 0.0007 | (1.3 ± 0.3) × 105 |
| Cas12a2 (F1092A) | -- | -- | -- | -- |
| dsDNA( Quencher on opposite strand) | 0.040 ± 0.005 | 0.218 ± 0.005 | 0.0145 ± 0.0003 | (3.6 ± 0.5) × 105 |
| 5'-F-TGTAACGACC −3' 3'- ACATTGCTGG-Q-5' |